Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014597.1 Corchorus olitorius cultivar O-4 contig14630, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69477

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
378--428
21
2.4
21
96
0
93
25
3
33
37
1.74
531--572
19
2.3
18
84
8
57
35
2
0
61
1.09
7128--7161
2
17.5
2
93
6
61
50
0
0
50
1.00
11934--12004
35
2.0
35
100
0
142
43
11
14
30
1.80
12215--12239
13
1.9
13
100
0
50
56
0
0
44
0.99
13564--13611
16
3.0
16
73
11
53
25
25
4
45
1.71
13569--13621
16
3.3
16
78
7
63
24
28
1
45
1.64
21767--22025
130
2.0
129
90
2
403
30
20
5
44
1.73
24494--24533
20
2.0
21
85
5
55
50
7
25
17
1.72
24908--24970
29
2.1
30
91
2
101
22
30
11
36
1.89
25051--25128
29
2.7
29
87
2
111
42
17
23
16
1.89
25455--25501
23
2.0
23
100
0
94
38
21
12
27
1.90
28937--28965
2
14.5
2
100
0
58
48
0
0
51
1.00
36278--36400
52
2.6
47
84
8
151
35
26
13
24
1.92
41007--41066
19
3.2
19
90
0
93
40
16
3
40
1.65
46462--46661
96
2.1
96
97
0
373
29
32
13
25
1.94
47741--47785
21
2.1
21
84
8
56
62
8
6
22
1.48
49243--49280
2
18.0
2
89
10
58
47
2
2
47
1.30
54668--54697
2
15.0
2
100
0
60
50
0
0
50
1.00
60141--60188
24
2.0
24
95
0
87
20
29
35
14
1.93

Tables:   1

The End!