Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000146.1 Corchorus olitorius cultivar O-4 contig00146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1313
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29


Found at i:596 original size:64 final size:64

Alignment explanation


    Indices: 495--627  Score: 266
    Period size: 64  Copynumber: 2.1  Consensus size: 64

        485 AGACAAGGAA

                                                                            
        495 AAGCTTGGAGAAAGAGGCGAAATTTCCACCAACACGCGTGAAGATGTCAACAAGGATATGAAGG
          1 AAGCTTGGAGAAAGAGGCGAAATTTCCACCAACACGCGTGAAGATGTCAACAAGGATATGAAGG

                                                                            
        559 AAGCTTGGAGAAAGAGGCGAAATTTCCACCAACACGCGTGAAGATGTCAACAAGGATATGAAGG
          1 AAGCTTGGAGAAAGAGGCGAAATTTCCACCAACACGCGTGAAGATGTCAACAAGGATATGAAGG

                 
        623 AAGCT
          1 AAGCT

        628 CGAGAGAAGT


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  64   69  1.00

ACGTcount: A:0.39, C:0.17, G:0.28, T:0.16


Consensus pattern (64 bp):   
AAGCTTGGAGAAAGAGGCGAAATTTCCACCAACACGCGTGAAGATGTCAACAAGGATATGAAGG
Done.