genome.fa.s14604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014604.1 Corchorus olitorius cultivar O-4 contig14637, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108910

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7815--7857	19	2.2	20	84	12	54	58	4	4	32	1.39
8999--9041	22	2.0	22	86	4	61	65	4	2	27	1.25
17109--17225	60	2.0	60	89	3	182	35	17	14	31	1.90
17330--17499	85	2.0	84	96	1	313	32	5	12	49	1.63
20241--20306	31	2.1	31	97	0	123	19	21	13	45	1.85
43924--44004	41	2.0	41	87	4	119	35	9	8	45	1.68
52074--52135	31	2.0	31	90	0	97	27	22	8	41	1.82
52171--52341	85	2.0	85	94	0	297	32	14	1	51	1.52
53025--53055	16	1.9	16	93	0	53	9	16	32	41	1.80
53707--53806	31	3.3	31	72	10	89	31	22	11	36	1.89
54886--54943	22	2.5	22	77	5	62	60	6	5	27	1.44
55049--55145	31	3.2	30	75	11	99	36	12	20	30	1.90
55416--55460	20	2.3	19	81	11	54	22	22	8	46	1.79
57841--57895	26	2.0	28	82	6	69	27	20	9	43	1.81
60797--60992	98	2.0	98	94	0	347	30	21	13	34	1.92
65147--65192	19	2.5	19	89	6	69	32	8	21	36	1.84
65157--65199	19	2.3	19	84	4	52	30	9	18	41	1.82
67147--67185	20	2.0	19	85	5	51	15	25	10	48	1.76
74819--75098	109	2.6	109	100	0	560	52	16	18	12	1.75
77895--77923	6	4.8	6	100	0	58	48	0	34	17	1.47
84271--84339	29	2.3	29	85	2	93	20	27	17	34	1.95
87372--87435	30	2.2	29	88	5	94	28	17	42	12	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91586--91625	21	1.9	21	89	0	62	37	17	7	37	1.78
91608--91644	19	1.9	19	88	0	56	32	16	13	37	1.87
97726--97810	29	2.9	29	84	5	116	36	23	24	15	1.93
99964--100035	36	2.0	36	97	0	135	23	13	9	52	1.70
100151--102908	662	4.2	654	80	7	2636	32	14	15	37	1.88
103450--105219	333	5.3	331	80	5	1935	32	14	16	36	1.89
102912--105211	664	3.4	663	85	4	2939	31	15	16	36	1.90
106519--106605	41	2.1	41	82	0	102	43	10	11	34	1.75
106848--106937	42	2.2	41	82	6	101	43	11	11	34	1.76
106951--107022	27	2.9	24	75	13	74	43	16	0	40	1.48
106991--108132	325	3.7	320	83	8	1325	35	12	11	40	1.80
107591--108330	297	2.5	282	78	12	789	36	13	9	40	1.78

Tables:   1

The End!