genome.fa.s14605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014605.1 Corchorus olitorius cultivar O-4 contig14638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22211

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359--579	119	1.9	117	86	7	320	40	10	11	37	1.75
2291--2561	134	2.0	134	99	0	533	30	17	12	39	1.87
3073--3127	28	2.0	27	86	10	76	12	10	27	49	1.74
4005--4061	16	3.4	16	69	21	53	36	17	7	38	1.77
4003--4060	19	3.2	19	65	20	52	34	17	6	41	1.76
10392--10445	26	2.1	26	100	0	108	31	20	7	40	1.80
10705--10750	24	1.9	24	90	0	74	43	28	2	26	1.66
13053--13094	21	2.0	21	86	9	59	47	35	0	16	1.47
14763--14800	2	19.0	2	100	0	76	50	0	0	50	1.00
15186--15420	74	3.0	81	78	11	245	43	19	12	24	1.85
15165--15450	155	1.8	154	83	8	373	43	20	12	22	1.86
15397--15508	59	1.9	59	85	1	154	43	22	10	23	1.84
15566--15805	53	4.3	55	80	8	238	43	23	9	22	1.83
15566--15804	57	4.3	56	80	10	244	43	23	9	23	1.82
15379--15821	243	1.8	244	89	2	694	44	23	10	22	1.83
15376--15773	117	3.3	117	73	13	403	44	23	9	22	1.82
15789--15847	21	2.8	21	89	2	91	44	23	20	11	1.85
15813--16163	74	4.8	73	89	3	508	44	23	12	19	1.85
15736--15920	95	2.0	94	85	7	250	44	22	13	19	1.85
15884--15940	20	2.8	19	81	10	60	45	22	14	17	1.84
16126--16474	53	6.5	54	72	14	219	42	22	10	23	1.85
16172--16308	53	2.6	53	90	0	220	43	24	8	24	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16705--16775	35	2.0	35	97	0	133	21	9	14	54	1.68
17189--17219	5	6.2	5	92	0	53	3	38	0	58	1.15

Tables:   1

The End!