Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014607.1 Corchorus olitorius cultivar O-4 contig14640, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64096

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6097--6122
13
2.0
13
100
0
52
38
7
15
38
1.76
8287--8347
30
2.0
30
93
6
106
14
40
16
27
1.88
8291--8360
30
2.3
30
87
4
97
14
38
17
30
1.89
12403--12451
25
2.0
25
100
0
98
12
32
20
34
1.90
14240--14264
12
2.1
12
100
0
50
36
8
16
40
1.77
16150--16321
55
3.2
55
60
17
126
28
13
25
32
1.93
16143--16353
105
2.0
105
100
0
422
28
12
26
32
1.92
18583--18635
20
2.6
21
87
3
81
50
26
0
22
1.49
20855--21555
332
2.1
330
81
6
801
36
14
14
34
1.87
21658--22358
338
2.1
331
81
7
826
35
14
14
34
1.88
26244--26268
13
1.9
13
100
0
50
44
8
16
32
1.76
28951--28977
13
2.1
13
100
0
54
48
0
14
37
1.45
37142--37276
56
2.4
57
93
1
227
41
18
14
25
1.88
37149--37276
57
2.3
56
93
1
211
39
18
14
27
1.89
37550--37589
20
2.0
20
85
0
53
75
10
7
7
1.20
45838--45972
22
6.3
22
63
13
66
39
6
15
38
1.74
45851--45953
44
2.3
44
85
3
136
38
7
13
39
1.74
45851--45953
22
4.7
22
74
11
77
38
7
13
39
1.74
46027--46074
22
2.2
22
96
0
87
47
8
10
33
1.68
46143--46354
22
9.6
22
71
16
113
37
16
8
38
1.78
46161--46311
44
3.4
44
73
14
132
37
14
8
39
1.77
46124--46284
87
1.9
87
83
7
211
37
16
8
38
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46510--46567
22
2.6
22
81
5
64
37
18
12
31
1.88
46568--46636
22
3.1
22
82
0
84
33
15
11
39
1.84
50400--50462
34
1.9
33
87
6
92
20
22
34
22
1.96
53485--53587
52
2.0
52
96
0
188
17
10
17
54
1.70
53908--53973
32
2.1
32
94
0
114
27
0
27
45
1.54
59520--59568
22
2.3
22
78
3
55
12
53
0
34
1.39

Tables:   1

The End!