Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014609.1 Corchorus olitorius cultivar O-4 contig14642, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49296

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--440
47
9.0
47
84
7
529
21
20
7
50
1.72
1--440
142
3.0
142
86
5
567
21
20
7
50
1.72
335--440
55
1.9
55
96
0
194
17
20
9
51
1.73
1--440
243
1.8
243
87
4
654
21
20
7
50
1.72
7518--7963
22
20.5
22
69
15
108
36
15
10
37
1.82
7516--8736
44
28.4
43
68
16
365
36
16
9
37
1.81
7740--7917
22
8.4
21
74
12
118
34
16
8
41
1.78
7951--7988
20
2.0
20
94
5
69
28
18
10
42
1.83
8064--8234
22
7.7
22
75
5
112
34
12
9
42
1.77
8063--8233
66
2.6
66
78
2
173
33
13
9
42
1.77
8351--8500
22
6.9
21
75
11
106
38
18
8
35
1.80
8339--8500
66
2.5
65
79
8
175
37
17
7
37
1.78
8586--8739
22
7.0
22
75
12
138
37
18
9
34
1.84
8533--8739
66
3.1
66
80
8
206
39
19
7
33
1.80
9181--9220
13
3.0
13
86
13
55
52
0
0
47
1.00
8956--9281
165
2.0
163
86
4
449
44
9
10
35
1.71
19329--19392
30
2.1
30
97
0
119
17
51
14
17
1.76
20163--20201
18
2.2
18
100
0
78
56
5
10
28
1.54
20251--20289
19
2.1
19
100
0
78
28
15
0
56
1.40
20375--20460
43
2.0
43
95
0
154
30
15
9
45
1.77
21918--21959
12
3.3
12
87
12
50
71
2
2
23
1.10
22066--22146
29
2.7
30
81
9
94
23
18
24
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22252--22283
16
2.1
15
94
5
55
50
0
0
50
1.00
25469--25544
31
2.5
31
82
6
84
30
15
7
46
1.75
25971--26021
21
2.5
20
93
6
93
25
1
5
66
1.24
26195--26256
29
2.2
28
83
11
81
41
1
1
54
1.19
29281--29336
16
3.4
16
75
20
53
58
1
1
37
1.19
29571--29637
2
37.5
2
71
21
51
53
1
1
43
1.19
29563--29642
30
2.7
28
74
14
70
53
1
1
43
1.16
29596--29641
14
3.3
14
82
11
58
52
2
2
43
1.25
43087--43138
27
2.0
26
89
10
81
48
5
23
23
1.72
46432--46471
14
2.7
14
88
7
53
12
5
35
47
1.63
47077--47132
26
2.1
27
90
9
89
46
10
7
35
1.66
47114--47164
23
2.3
23
96
3
95
56
3
15
23
1.56
48579--48727
73
2.0
73
90
2
237
34
17
6
41
1.74
48753--49143
129
3.0
129
95
1
685
37
9
1
51
1.43

Tables:   1

The End!