Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014613.1 Corchorus olitorius cultivar O-4 contig14646, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66283

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--4257
332
12.9
333
81
7
4511
32
13
16
36
1.89
4177--4396
109
2.0
109
84
5
284
35
10
18
35
1.85
5637--5679
21
2.0
22
82
13
54
62
4
18
13
1.48
24252--24351
50
2.0
50
100
0
200
32
22
14
32
1.93
27026--27057
1
32.0
1
100
0
64
100
0
0
0
0.00
34741--34834
44
2.1
44
98
0
179
28
9
18
43
1.81
34946--35239
147
2.0
148
97
0
563
30
17
15
36
1.90
48161--48275
31
3.7
31
79
0
131
17
22
24
35
1.95
48140--48289
62
2.4
62
84
1
176
18
22
23
36
1.95
61117--61175
19
3.0
20
87
5
84
38
10
22
28
1.86
61313--61343
16
1.9
16
93
0
53
77
19
3
0
0.90
63221--63254
2
17.0
2
100
0
68
50
0
0
50
1.00
64090--64114
2
12.5
2
100
0
50
48
0
0
52
1.00
66252--66283
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!