Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014616.1 Corchorus olitorius cultivar O-4 contig14649, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18269
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:5226 original size:156 final size:156
Alignment explanation
Indices: 4932--5249 Score: 573
Period size: 156 Copynumber: 2.0 Consensus size: 156
4922 TCTTTGCTAT
*
4932 TCAAGTTAGAAAATTTATACATTCTGAACTTTGTAAAAGATATATGTTAGATATAATGATCTTAA
1 TCAAGTTAGAAAATTTATACATTCTGAAATTTGTAAAAGATATATGTTAGATATAATGATCTTAA
*
4997 TTATGCTTTGTTTTGGTGATATGTGGATATCTTATGTGACATTGCATTTATAGATGGCTGATGTA
66 TTATGCTTTGTTTTGGTGATATGTGGATATCTTATATGACATTGCATTTATAGATGGCTGATGTA
*
5062 GTGTATCAATAATGTCTTCAATTGCC
131 GTGCATCAATAATGTCTTCAATTGCC
* * *
5088 TCAATTTAGAAAATTTATACATTTTGAAATTTGTAAAAGATATATGTTAGATATGATGATCTTAA
1 TCAAGTTAGAAAATTTATACATTCTGAAATTTGTAAAAGATATATGTTAGATATAATGATCTTAA
*
5153 TTATGCTTTGTTTTGGTGATATGTGGATATCTTATATGACATTGCCTTTATAGATGGCTGATGTA
66 TTATGCTTTGTTTTGGTGATATGTGGATATCTTATATGACATTGCATTTATAGATGGCTGATGTA
5218 GTGCATCAATAATGTCTTCAATTGCC
131 GTGCATCAATAATGTCTTCAATTGCC
5244 TCAAGT
1 TCAAGT
5250 GAAAAAGGAG
Statistics
Matches: 154, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
156 154 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (156 bp):
TCAAGTTAGAAAATTTATACATTCTGAAATTTGTAAAAGATATATGTTAGATATAATGATCTTAA
TTATGCTTTGTTTTGGTGATATGTGGATATCTTATATGACATTGCATTTATAGATGGCTGATGTA
GTGCATCAATAATGTCTTCAATTGCC
Found at i:8318 original size:7 final size:7
Alignment explanation
Indices: 8306--8332 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
8296 TTTTTAGGTG
8306 CTTGCTT
1 CTTGCTT
8313 CTTGCTT
1 CTTGCTT
8320 CTTGCTT
1 CTTGCTT
8327 CTTGCT
1 CTTGCT
8333 CATTCTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.30, G:0.15, T:0.56
Consensus pattern (7 bp):
CTTGCTT
Found at i:9838 original size:334 final size:332
Alignment explanation
Indices: 8473--18226 Score: 9904
Period size: 333 Copynumber: 29.5 Consensus size: 332
8463 ATTTTATGAT
* * *
8473 CCCGAATGATTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATATATAAATCATCGCAAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* **
8538 AAGATTGAAGGGTTTTTCACGCTTCGAAGATCGTTTTTCAAATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
*
8603 TTAAATTGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* *
8668 GGGTAGATGAATATAGATAATCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTAAGCCGGGG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGG
* * * * *
8733 CCCCGCAACGCGTTTTTAGTCGAAAACTATGATGGTTATCACACGATTACGGTCAAGATTTTGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
* *
8798 AAATTTAA
325 AAAATTGA
** * * *
8806 CCCGAATG-TTTTTTTTCAATTTTTGGCCAAAATACTCATAAAAGATATTTAAATAATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * * *
8870 AAGATTTAAGGGTTTTCCACGCTTCGAAGATCGTTTTTCCTATACTTCTCCGAATTAAATTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * * *
8935 TTAAATGGAAACTGTATTATGATGCTCGTAAAAATAAATCTTTAAATATTATGTGGCTGAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* *
9000 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACAGAACCGGGC
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGGG-
* * *
9065 CCCCGGAACGCGTTTTTTGCCGAAAACTGTGATGGTTAGCACACAATTTCAGTCAAGATTTTGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
*
9130 AAAATTGC
325 AAAATTGA
* *
9138 CCCAAATGATTTTTCCTCAATTTTTGG--------------AAAAATACATAAATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * *
9189 AAGTTTGGAGGGTTTTTCACGCTTCTAATATCGTTTTTCTTATGCTTTTCCAAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* *
9254 TTAAATCGAAATTGGATTCTGATGCTCGTAAAAACAAATCTTGAAATCTTATGTGGCTGAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
** * *
9319 ACGTAGATGAATATAGATATTCCAAGGAGTCTTGTCGCCAAAACTCATACAAAACTGAGCCGGAG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG-G
* * * *
9384 CCCTGGAACGCGCTTTTAGCCGAAAACTGTGGTGGTTAGCAAACGATTTCGGTCAAGATTTTGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
9449 AAAATTGA
325 AAAATTGA
* ** * * **
9457 TCCGAATGATTTTTAATCAATTTTCGACCAAAATACTCATAAAAAAATATATAAATCATCGGCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCAT-AAAAAATATATAAATCATCACCAA
** * *
9522 AAAGATTGAAGGGTTTTAAACGCTTCGAATATTGCTTTTCCTATGCTTTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* * * * *
9587 ATTAAATGGAAATTGGATTCTGATGTTCGTAAAAACAAATCTTTAAATATTATGTGGTTGAGATT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
9652 TGGGTAGATGAATATAGATATTCCAAGGAGT-TATGGCGCCAAAAATCATACAAAACTGAGCCGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCT-TGGCGCCAAAAATCATACAAAACTGAGCCGG
* *
9716 GCCTCCGGAACGCGTTTTTTTGCCGAAAACTGTGATGGTTAGCACATGATTTCGGTCAAGATTTT
259 GCC-CCGGAACGCG-TTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTT
*
9781 GCAAAAATTGC
322 GCAAAAATTGA
* * ** * * *
9792 CCCAAATGATTTATCCTCAATTTTTCACTAAAATACTCATAAAAAATACATATATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * *
9857 AAGTTTGGAGGGTTTTTCACGTTTCGAATATCGTTTTTCTTATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * *
9922 TTAAATCGAAACAT-GATTTTGATACTCGTAAAAACAAATCTTTAAATCTTATGTTGCTGAGATT
131 TTAAATCGAAAC-TGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * * *
9986 TTGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAACTCATACAAAAATTAGCCGGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GG
* * * * *
10051 GCCCTGGAACTCGTTTTCAGCCGAAAACTGTGATGGTTATCACACGATTACGGTCAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
* *
10116 AAAATTTAA
324 AAAAATTGA
* * * **
10125 ACCGAATGATATTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATAATTGCCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * *
10190 AAGATTGAAGTGTTTTTCACGCTTCGAAGACCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * * * *
10255 TTAAATAGAAACTGGATTCTGATGCTCGAAAAAATAAATCATTAAATATTATGTGG-TAGATATT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCT-GAGATT
* *
10319 TGGGTAGATGAATATAGATATTCCAAGGAGTCTGGGCGCCAAAAATCAAACAAAACTGAGCCGGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GG
10384 GCCCCGGAA--C-------G-CG-----T-T--T--TT----CACGATTTCGGTCAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
10425 AAAAATTGA
324 AAAAATTGA
** * * *
10434 CCAAAATGATTTTTCCTAAATTTTTTGCTAAAATACTCATAAAAAATATATAAATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * *
10499 AAGTTTGGAGGGTTTTTCACGCTTCGAATATCATTTTTCTTATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* ** * * * *
10564 TTAAATCCAAACTAAATTCTGATGCTCG-CAAAACAAATCATTGAATCTTATGTGGCTAAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* *
10628 GGGTAGATGAATATAGATATTCCAAGGATTCTTGGCGCCCAAAATCATACAAAACTGAGCCGGGG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GGG
* * * *
10693 CCTCGGAACGCGTTTTTAGCCTAAAACTGTGATTGTTAGCACACGATTTCGGTTAAGATTTTGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
10758 AAAATTGA
325 AAAATTGA
* *
10766 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATATTCATAAAAAATATATAATTCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * *
10831 AAGATTGAATGGATTTTCAAGCTTCGAATTTCG-TTTTCCTAAGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * * * * *
10895 TTAAATCGAAATTAGACTCTGATTCTCGTAAAAACATATCTTTAAATGTTATGTGGCTGAAATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* * * * * * * *
10960 GGGTAGATTAATATAGATATTCCAAGGAATCTTGGCGCCAAAGTAGATGAATATAGATATTCA-A
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAA--A-AT-CATACA-AAACTGAGC
* ** ** * **** * * ** **** **
11024 AGGATTCTTGG-ATGCCAAAAATCA-CAC-AAAACTGAGCCGGGGCCCCGACATTCCTTTTTAGC
256 CGG-GCCCCGGAACG-C-GTTTTTAGC-CGAAAACTGTG-ATGGTTAGC-ACA---CGATTT--C
* ** **
11086 CGAAAACTGTGATGGTTAT-CACACGATT-A
310 GGTCAA----GAT--TT-TGCA-AAAATTGA
* * ** * ** ** *****
11115 CGGTCAAGATTTTGCAAAATTTAACC-CGAATGATTTT-TCCTCAATTTTTGGCCAAAATACTCA
1 C---C-CGA--ATG----ATTTTTCCTC-AAT--TTTTGGCCAAAATACTCATAAAAAATA-T-A
** *** * * ** * ** * *
11178 TAAAAGAT-TTTAAATA-ATCGCCAAAAAG-ATTGAAGGGTTTTCCACGCTTCGAAGATCGTTTT
51 TAAATCATCACCAAAAAGATTG---AAGGGTTTTTCA-CG---------CTTCGAATATCGTTTT
* * * * * * *
11240 TCCTATGCTTCTCTGAATTAGTTTCCAATTAAATGGAAACTGTATTCTGATGCTTGTAAAAATAA
103 TCCTATGCTTTTCCGAATTAATTTCCAATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAA
*
11305 ATCTTTAAATATTATGTGGCTGAGATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCG
168 ATCTTTAAATCTTATGTGGCTGAGATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCG
* * * * *
11370 CCAAAAAGCATACAAAACTGAGTCGGGCCCCGGAACGCGTTTTTTGCCGAAAACTGTAAT-GTAA
233 CCAAAAATCATACAAAACTGAGCCGGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTA
* *
11434 CGCACATGATTTCGGTCAAGATTCTGCAAAAATTGA
298 -GCACACGATTTCGGTCAAGATTTTGCAAAAATTGA
** * * * * *
11470 CCTAAATGA-TTCTCCT-GATTCTTTTGCTAAAATACTCATAAAAAATACATAAATCATCACCAA
1 CCCGAATGATTTTTCCTCAATT-TTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAA
* * * * *
11533 AACGTTTGGAGGGTTTTTCACGCTTCGAATATCGTTTTTCTTATGCATTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* * * *
11598 ATTAAATTGAAACTTGATTCTGATGCTCTTAAAAACAAATCTTTAAATCTTAT-TGGCTAAGATT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
** * *
11662 TGCATAGATGAATATAGATATTCCAAGAAGTCTTGGCGCCGAAAATCATACAAAACTGAGCCGGA
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG-
** * *
11727 GCCTTGGAACGCGTTTTTAGCCGAAAACTGTGATTGTTAGCACACGATTTCGGTTAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
11792 AAAAATTGA
324 AAAAATTGA
* ** * * *
11801 CCCGAATGATTTTTCCACAATTTTTGGCCAATTTATTCA-AAAAAATATATAATTCATCGCCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * **
11865 AAGATTGAAGGGATTTTCACGCTTCGAATATAGTTTTTCCTATTCTTTTCCAAATTAATTTATAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * * * * *
11930 TTAAATCGAAATTAGACTCCGATTCTCGTAAAAACATATCTTTAAATCTTATGTGGCTGAAATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* * * *
11995 GAGTAGATTAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTAAGCTGCGG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCG-GG
* * * * * * *
12060 CCCCGGAACACGTTTATAGCCGAAAGCTGTGATGGTTAACATACGATTTTGGTCAAGATTTAGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
*
12125 AAAATTCA
325 AAAATTGA
* * *
12133 CCCGAATGATTTTTACTCAATTTTTTGCC-AAATACTCATAAAAAATATATAAATCATCGCCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * * *
12197 AAGATTGAAGGGTGTTTAACGATTCGAATACCGTTTTTCCTACGATTTTCCGAA-TAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * ** * *
12261 CTAAATCGATACAGGACCCTGATTCTCGTAAAAGA-ATAA--TTTAAAT-TCTATGTGGCTGATA
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAA-ACA-AATCTTTAAATCT-TATGTGGCTGAGA
* * * ** * *
12322 TTTAGGAAGATGAATATAGATATTCAAAGGTTTCTTGGCGCCAAAAATCACATAAAACTGAGCCG
193 TTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-
* * *
12387 GGGCCCTGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTATCACACGATTACGGTCAAGATTTT
257 GGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTT
* *
12452 GCAAAATTTAA
322 GCAAAAATTGA
* * * *
12463 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAGATATTTAAATAATCGCCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * *
12528 AAGATTGAAGGGTTTTTCACACTTTGAAGATCGTTTTTCGTATGCTTCTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * * *
12593 TTAAATAGAAACTGTATTCTGATGCTCGTAAAAATAAATCTTTAAATATTATGTGGCTGAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* * * *
12658 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGTGCCAAAAAGCTTACAAAACAGAGCCGGGC
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGGGC
* * *
12723 CCTCGAAACGCGTTTTTTGCTGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
261 CC-CGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
*
12788 AAAATTGC
325 AAAATTGA
* ** * * * *
12796 CCCAAATGGGTTTTCCTCAATTTTTTGCTAAAATGCTCATAAAAAATACATAAATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* ** *
12861 AA-ATTTGGAGGGTTTTTCACGCTTCGAATATCGTTTTTGTTATGCTTTTCCGAATTAATTTCAA
66 AAGA-TTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* *
12925 ATTAAATCGAAACTGAATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTTGCTGAGATT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * ** *
12990 TGAGTAGATGAATATAGATATTCCAAGGAGTCCTGGCGCCAAATCTCATACAAAACTTAGCCGGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GG
* * * * *
13055 GCCTCGGAACTCGTTTTCAGCCGAAAACTGTGATGGTTATCACACGATTACGGTCAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
* *
13120 AAAATTTAA
324 AAAAATTGA
* * * **
13129 CCTGAATGATGTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAGA-AATTGCCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAA-ATCATCACCAA
* ** * * *
13193 AAAGATTAAAATGTTTTTCACGCTTCGAAGATCGTTTTTCCCATGGTTTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* * * *
13258 ATTAAATCGAAACAGGATTCTGATGCTCGTACAAACAATTCATTAAATCTTATGTGGCTGAGATT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * *
13323 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCAAAAAATCAAACAACACTGAGCCGGA
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG-
* * *
13388 GCCCCGGAACGCCTTTTTTTGCCGAAAACTGTGATGGTTGGCACACGATTTCGGTCAAGATTTTG
259 GCCCCGGAACG-CGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTG
*
13453 CAAAAATTTAA
323 CAAAAA-TTGA
* * * *
13464 CCCG-TTGATTTTTCCACAAATTTTGGCCAAAATACTCATAAATAAATAAATAAATCATCACCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAA-AAATATATAAATCATCACCAA
* * * *
13528 AAAGTTTGGACGGTTTTTCACGCTTCGAATATCGTTTTTCTTATGCTTTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* * * *
13593 ATTAAATCGAAACAGTATTCTGATGCTCGTACAAACAAATCTTTAAATCTTATGTGGCTGAGAAT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * * *
13658 TGGGTAGATGAATATAGATATTCCAAGGATTCTTAGCGCAAAAAATCATACAAAACTGAGCTGGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGC-CGG
* * * *
13723 GCCCTGGAACGCG-TTTTAGTCGAAAACTATGATGGTTAGCACACGATTTCGGTCAAGATATTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
13787 AAAAATTGA
324 AAAAATTGA
* * *
13796 CCCCGAATGACTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATATATAAATCATCTCCAA
1 -CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAA
* ** * * * *
13861 GAAGATTTGAAGGGTTTTTCATACTTCGAAGATCGTTTTTCCTATCCATCTCCGAATTAATTTCC
65 AAAGA-TTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCC
* * * *
13926 -ATTAAAT-GGAACTAGG-TTCTGATGCTTGTACAAACAAATCATTAAATCTTATGTGGCTGAGA
129 AATTAAATCGAAACT-GGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGA
* * * *
13988 TTTGGGTAGATAAATAAAGATATTCCAAGGAGTCTTGGCGCAAAAAATCATAAAAAACTGAGCCG
193 TTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-
*
14053 GGGCCCCGGAACGCGTTTTTAGCCGAACACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTT
257 GGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTT
14118 GCAAAAATTGA
322 GCAAAAATTGA
* * * * *
14129 TCCCGATTGGTTTTTCCTCAAATTTTGGTCAAAATTA-TCATAAAAAATAAATAAATCATCACCA
1 -CCCGAATGATTTTTCCTCAATTTTTGGCCAAAA-TACTCATAAAAAATATATAAATCATCACCA
* * * *
14193 AAAAGTTTGGACGGTTTTTCACGCTTCGAATATCGTTTTTCCTATACTTTTCCGAATTAATTTCC
64 AAAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCC
* *
14258 AATTAAATCGAAACTGGATTCTGATGCTCATAAAAA-AAATCTTTAAATCTTATGTGGCTGAGAA
129 AATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGAT
* * * * * * * *
14322 CTGTGTAGATGAATATAGATATTCCAAGGATTCTTAGCGCCAGAAATAATACAAAACTGAACTGG
194 TTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGC-CG
* *
14387 GGCCCCGGAACGCGTTTTTAGTCG----C----A----T-----ACGATTTCGATCAAGATTTTG
258 GGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTG
* *
14435 CAAAATTTTA
323 CAAAAATTGA
* * *
14445 -ACGAGAGTGATTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATAAATAAATCATCACCA
1 CCCGA-A-TGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCA
* * * * * *
14509 AAAAGTTTGGACGGTTTTTCAGGCTTCGAATATCGTTTTTGCTATGCTTTTCCGAATTTATTTCC
64 AAAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCC
* *
14574 AATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTCATGTGGCTGAAAT
129 AATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGAT
* *
14639 TTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGCTGG
194 TTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGC-CG
*
14704 GGCCCCGGAACGCATTTTTAGCCGAAAAC-----T-G-T-------GA--T--G-C------TTG
258 GGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTG
14744 CAAAAATTGA
323 CAAAAATTGA
* * * * **
14754 CCCAAATGATTTTTCCTCCATTTTTTGCTAACAA-ACTCAT-AAAAATATATAAATCGAAATTGC
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAA-AATACTCATAAAAAATATATAAATC---ATCAC
* ** * ** * * *
14817 CAAAAAGATTAAAATGTTTTTCACGCTTCGAAGATCGTTTAACCTATACATTTCCGAATCAATTT
62 CAAAAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTT
* * * *
14882 CCAATTAAATCGAAACAGGATTCTGATGCTCGTACAAACAATTCATTAAATCTTATGTGGCTGAG
127 CCAATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAG
*
14947 ATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCAAAAAATCATACAAAACTGAGGC
192 ATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGA-GC
* * * * * *
15012 GGGGCCTCGGAACGCCTTTTTTGCCGAAAACTGTGAT--TTAACATACGATTTCGGTCAAGATTT
256 CGGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTT
*
15075 TGCAAAAACTTAA
321 TGCAAAAA-TTGA
* *
15088 CCCGAATGATTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATAAATAAATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * *
15153 AAGTTTGGACGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * *
15218 TTAAATCGAAACTGGATTCTGATGCTCATAAAAAAAAATCTTTAAATCTTATGTGGCTGAGAATT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
* * * * *
15283 GTGTAGATGAATATAGATATTCCAAGGATTCTTAGCGCCAAAAATCATACAAAACTGAACTGGGG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGC-CGGG
* * *
15348 CCCCGGAACGC--ATTT----------T-T-A--G-TCGCACACGATTTCGATCAAGATTTTGCA
260 CCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCA
*
15396 AAAATTTAA
325 AAAA-TTGA
* * * * * *
15405 CCAGAGTGATTTTTCCCCAAATTTTGGCCAAAGTACTCATAAAAAATAAATAAATCATCACCAAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
* * * * *
15470 AAGTTTGGACGGTTTTTCAGGCTTCGAATATCGTTTTTGCTATGCTTTTCCGAATTAATTTCCAA
66 AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
* * *
15535 TTAAATAGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTGTGTGGCTCAGATTT
131 TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
*
15600 GGGTAGATGAATATAGATATTCCAAAGAGTCTTGGCG-CATAAAATCATACAAAACTGAGCCGGG
196 GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCA-AAAATCATACAAAACTGAGCC-GG
* *
15664 GCCCCAGAACGCGTTTTTAGCCGAAAATTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
15729 AAAAATTGA
324 AAAAATTGA
* * * ** * ** *
15738 TCCAAAAGATTTTTCCTCAATTTTTGGCTTTAAA-AGTCATAAAAGTTATATAAATCATAACCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGC-CAAAATACTCATAAAAAATATATAAATCATCACCAA
* * * * *
15802 AAAGTTTGGAGGGTTTATCACGCTTCAAATATCGTTTTTCCTATTCTTTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* * * * *
15867 ATTAAATCGAAACAGTATTATGATGCTCGTACAAACAAATCTTTAAATCTTATGTGGCTGAGAAT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * *
15932 TGGGTTGATGAATATAGATATTCCAAGGATTCTTAGCGCCAAAAATCATACAAAACTGAGCCGGG
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-GG
* * * * *
15997 GCCCTGGAACGAGTTTTTAGTCGAAAACTGTGATGGTTAGCACACGATTTCGATCAGGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
16062 AAAAATTGA
324 AAAAATTGA
* * *
16071 CCCCGAATGATTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATAAATAAATCTTCACCAA
1 -CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAA
* * * *
16136 AAAGTTTGGACGGTTTTTCACGCTTTGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
* *
16201 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCCGAGAAT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATT
* * *
16266 TGGGTAGATGAATATAGATATTCCAAGGATTCTTAGCGCCAAAAATCATACAAAACTGAGCTGGT
195 TGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG-
* * *
16331 GCCCCGGAACGCG-TTTTAGTCGAAAACTGTGATGTTTAGCACACGATTTCGGTTAAGATTTTGC
259 GCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGC
16395 AAAAATTGA
324 AAAAATTGA
* * *
16404 CCCCCGAATGATTTTTCCTCAAATTTTGGCCAAAATACTCATAAAAAATATATAAATCGTCTCCA
1 --CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCA
* * * *
16469 AGAAGATTGAAGGGTTTTTCACACTTCGAAGATCGTTTTTCCTATCCTTTTCCGAATTAATTTCC
64 AAAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCC
* * * *
16534 AATTAAATGGAAACTAGG-TTCTGTTGCTCGTACAAACAAATCTTTAAATATTATGTGGCTGAGA
129 AATTAAATCGAAACT-GGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGA
*
16598 TTTGGGTAGATGAATATAGATATTCCAAGGACTCTTGGCGCCAAAAATCATACAAAACTGAGCCG
193 TTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC-
* * * * * *
16663 GGGCTCCGAAACGCCTTTTTTGCCGAAAACTGTGATGG-TGGCACACGATTTCGGTTAAGATTTT
257 GGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTT
16727 GCAAAAATTGA
322 GCAAAAATTGA
* * * * * * *
16738 CCCAAATGATTTTTCCTCAATTTTTTGCTAAAATACTCATAAAAATTATATAATTTAGT-ACCTA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCA-TCACCAA
** * * * * * * ** * *
16802 TGAGATTGGAGGGCTTGTCACAG-TTCTAATATCATTTTCCCTATTTTTTTTCAGAATTATTTTC
65 AAAGATTGAAGGGTTTTTCAC-GCTTCGAATATCGTTTTTCCTA-TGCTTTTCCGAATTAATTTC
* * * * * * * ** * *
16866 TAATTAAATCGAAACTAGTTTTTGATGCTCGTAAAAACATATCCCTT-ATTCCAACGTGGCTGGG
128 CAATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAAT-CTTTAAATCTTATGTGGCTGAG
** * * * * * * * * **
16930 ATTTGATTAGATAAATATAGACATTTCAAGGAGTCTCGGTGCCAAAAATTATGCAAAATTGAGTT
192 ATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC
** * * * * *
16995 GGATCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG-CTAAAATTT
257 GGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTC-AAGATTT
17059 TGCAAAAATTGA
321 TGCAAAAATTGA
* * * * * * * * *
17071 CCCTAATTATTTTTCTTTAATTTTAGG-AAAAATACTCATAAAAATTATATAATTCAGT-ACC-T
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCA-TCACCAA
* * * * * * ** * *
17133 AAAGATTGGAGGGCTTTTAACGGTTCTAATATC-TTTTCCCTATTTTTTTCAGAATTAATTTCTA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCA
** * * * * * ** * * *
17197 ATTAAATCGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTT-AGTCCAACGCGGCTGGGAT
130 ATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAAT-CTTTAAATCTTATGTGGCTGAGAT
* * * * * * * * *
17261 TTGGTTAGATAAATATAGATATTTCAAGGAGTCTCGGTGCAAAAAATCATGCAAAATTGAGTCGG
194 TTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGG
* * * * * * ** *
17326 ACCCCAGAACACAG-TTTTAGCCAAAAACCGTGA----TACGTACACGATTTC-ACCTAAAATTT
259 GCCCCGGAACGC-GTTTTTAGCCGAAAACTGTGATGGTTA-GCACACGATTTCGGTC-AAGATTT
* *
17385 TGCAAAAGTGGA
321 TGCAAAAATTGA
* * * ** * *
17397 CCCGAATTATTTTTCTTTAATTTTTGGAAAAAATACTCATAAAAATTATATAATTCAGT-ACCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCA-TCACCAA
* * * ** * ** *
17461 AAAGGTTGGAATGG-TTTTCGC-CATTTTTAATATCATTTTTCCTATTTTTTTCAGAATTAATTT
65 AAAGATT-GAAGGGTTTTTCACGC--TTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTT
* * ** * * * ** *
17524 CTAATTAAATTGAAAC-CAATTTCAGATGCTCGTAAAAACATATCCCTT-AATCCAACGTGGCTG
127 CCAATTAAATCGAAACTGGA-TTCTGATGCTCGTAAAAACAAAT-CTTTAAATCTTATGTGGCTG
* ** * * *** * *
17587 GGATTTGAATAGATAAATATAGATATTTCAAGGAGTCTCATCGCCAAAAATCATGCAAAATTGAG
190 AGATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAG
* * * * * * *
17652 TCGGACCCCGGGACGCGGTTTTAGCC-AAAAATCGTGATGGTTAGTACACGATTTCAGGT-AACA
255 CCGGGCCCCGGAACGCGTTTTTAGCCGAAAACT-GTGATGGTTAGCACACGATTTC-GGTCAAGA
17715 TTTTGCAAAAATTGA
318 TTTTGCAAAAATTGA
* * ** * * * * * *
17730 CCCGAATTATTATTATTTAATTTTCGGCAAAAATACTCATAAAAATTATATAATTCAGT-ACCTA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCA-TCACCAA
* * * * * ** * * **
17794 AAAGATTGGAGGGCTTTTCACGGTTCTAATATC-ATTTTCACTATTTTTTTCAGAATTATTTTTA
65 AAAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTC-CTATGCTTTTCCGAATTAATTTCC
* ** * * * * * ** *
17858 AATTAAATTGAAACCAGTTTCAGATGCTCGTAAAAACATATCCCTT-ATTCCAACT-TGGCTGGG
129 AATTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAAT-CTTTAAATCTTA-TGTGGCTGAG
** * * * * * ** * *
17921 ATTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGGTGCCAAAAATAATGTAAAATTGAGTC
192 ATTTGGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCC
* * ** * ** * * * * *
17986 GGACTCCAAAATGCACTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAG-CTAAAATTT
257 GGGCCCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTC-AAGATTT
18050 TGCAAAAATTGA
321 TGCAAAAATTGA
** * * * * ** * *
18062 CATGAATTATTTTTCTTTAATTATTGGAAAAAATACTCATAAAAATTATATAATTCAGT-ACCAA
1 CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCA-TCACCAA
* * * * ** * * * *
18126 AAAGGTTGGAGGGTTCTTCACGATTTTTAATATCATTTTCCCTAT--TTTTCAGAATTAATTTCT
65 AAAGATTGAAGGGTTTTTCACG-CTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCC
** *
18189 AATTAAATCGAAAC-CAATTTCAGATGCTCGTAAAAACA
129 AATTAAATCGAAACTGGA-TTCTGATGCTCGTAAAAACA
18227 TATCCCTTAA
Statistics
Matches: 7980, Mismatches: 1174, Indels: 536
0.82 0.12 0.06
Matches are distributed among these distances:
307 14 0.00
308 123 0.02
309 181 0.02
310 206 0.03
311 2 0.00
313 2 0.00
314 3 0.00
315 6 0.00
316 178 0.02
317 387 0.05
318 4 0.00
319 279 0.03
320 4 0.00
321 2 0.00
322 3 0.00
323 3 0.00
324 3 0.00
325 3 0.00
326 58 0.01
327 35 0.00
328 13 0.00
329 189 0.02
330 413 0.05
331 531 0.07
332 1553 0.19
333 1906 0.24
334 1201 0.15
335 343 0.04
336 20 0.00
337 9 0.00
338 3 0.00
340 3 0.00
341 15 0.00
342 6 0.00
343 19 0.00
344 4 0.00
345 1 0.00
347 3 0.00
349 8 0.00
350 5 0.00
351 1 0.00
352 2 0.00
353 2 0.00
354 5 0.00
355 7 0.00
357 3 0.00
358 1 0.00
359 9 0.00
360 16 0.00
361 13 0.00
362 9 0.00
363 7 0.00
366 4 0.00
367 3 0.00
368 16 0.00
369 8 0.00
370 1 0.00
371 1 0.00
372 10 0.00
373 121 0.02
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (332 bp):
CCCGAATGATTTTTCCTCAATTTTTGGCCAAAATACTCATAAAAAATATATAAATCATCACCAAA
AAGATTGAAGGGTTTTTCACGCTTCGAATATCGTTTTTCCTATGCTTTTCCGAATTAATTTCCAA
TTAAATCGAAACTGGATTCTGATGCTCGTAAAAACAAATCTTTAAATCTTATGTGGCTGAGATTT
GGGTAGATGAATATAGATATTCCAAGGAGTCTTGGCGCCAAAAATCATACAAAACTGAGCCGGGC
CCCGGAACGCGTTTTTAGCCGAAAACTGTGATGGTTAGCACACGATTTCGGTCAAGATTTTGCAA
AAATTGA
Done.