Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014620.1 Corchorus olitorius cultivar O-4 contig14653, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16743
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:9722 original size:14 final size:14

Alignment explanation


    Indices: 9703--9729  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       9693 AATTAATGTT

                          
       9703 AAAAAAAAAACGAA
          1 AAAAAAAAAACGAA

                         
       9717 AAAAAAAAAACGA
          1 AAAAAAAAAACGA

       9730 GAGAGAGTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00


Consensus pattern (14 bp):   
AAAAAAAAAACGAA

Found at i:16664 original size:2 final size:2

Alignment explanation


    Indices: 16657--16743  Score: 174
    Period size: 2  Copynumber: 43.5  Consensus size: 2

      16647 GGTCTCTGTC

                                                                          
      16657 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                                                                          
      16699 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
          1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG

                
      16741 AG A
          1 AG A


Statistics
Matches: 85,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   85  1.00

ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00


Consensus pattern (2 bp):   
AG

Done.