Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014621.1 Corchorus olitorius cultivar O-4 contig14654, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2005
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36


Found at i:649 original size:19 final size:19

Alignment explanation


    Indices: 621--669  Score: 71
    Period size: 19  Copynumber: 2.6  Consensus size: 19

        611 TAATGTAGAT

                 *             
        621 ATAAAGTTTGTTATTCACA
          1 ATAAATTTTGTTATTCACA

                        *   *  
        640 ATAAATTTTGTTTTTCGCA
          1 ATAAATTTTGTTATTCACA

                       
        659 ATAAATTTTGT
          1 ATAAATTTTGT

        670 GATTGTCAGG


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   27  1.00

ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49


Consensus pattern (19 bp):   
ATAAATTTTGTTATTCACA
Done.