Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014622.1 Corchorus olitorius cultivar O-4 contig14655, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4131
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Found at i:1201 original size:31 final size:28
Alignment explanation
Indices: 1142--2033 Score: 825
Period size: 31 Copynumber: 32.2 Consensus size: 28
1132 ATCTACTATC
*
1142 TAGTTGCATATTTAGTAGGGC---CATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
*
1167 TAGTTACATATTCAGTAGGGTCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1198 TAG-TGACATATTCAGTAGGGTCATAATCATA
1 TAGTTG-CATATTCAGTAGGG-C-T-ATCATA
1229 TAG-TGACATATTCAGTAGGG---TCATA
1 TAGTTG-CATATTCAGTAGGGCTATCATA
*
1254 TAGTTGCATATTCAATAGGG---TCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
** *
1279 TAGTTATATATTCAGTAGTGTCATAATCATA
1 TAGTTGCATATTCAGTAG-GGC-T-ATCATA
* *
1310 TAGTGGCATATTCAGTA-GG-T-TCATG
1 TAGTTGCATATTCAGTAGGGCTATCATA
1335 TAGTTGCATATTCAGTAGGG---TCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
*
1360 TAGTTGCATATTCAGTA-GG--ACCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1385 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
*
1416 TAGTTGCATATTCAGTAGGG--GTCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
*
1442 TAGTTGCATATTTAGTAGGGGC---CATA
1 TAGTTGCATATTCAGTA-GGGCTATCATA
*
1468 TAGTTGCATATTCAGTAGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGGC-T-ATCATA
*
1498 TAGTTGCATATTCAGTAGGG--GTCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1524 TAG-TGCATATTCAGTAGGGGC---CATA
1 TAGTTGCATATTCAGTA-GGGCTATCATA
1549 TAGTTGCATATTCAGTAGGGC---CATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1574 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
*
1605 TAGTTGCATATTCAGTAGGG--GTCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1631 TAGTTGCATATTCAGTAGGGGC---CATA
1 TAGTTGCATATTCAGTA-GGGCTATCATA
1657 TAGTTGCATATTCAGTAGGGC---CATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
* *
1682 TTGTTGCATATTCAG-AAGGC--TCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1707 TAGTTGCATATTCAGTAGGGTCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1738 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1769 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1800 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1831 TAGTTGCATATTCAGTAGGAGC---CATA
1 TAGTTGCATATTCAGTAGG-GCTATCATA
1857 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1888 TAGTTGCATATTCAGTAGGGCCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
1919 TAGTTGCATATTCAGTAGGGTCATAATCATA
1 TAGTTGCATATTCAGTAGGG-C-T-ATCATA
*
1950 TAGTTGCATATTCAGTAGGG--GTCATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
1976 TAGTTGCATATTCAGTACGGG-T-T-ATA
1 TAGTTGCATATTCAGTA-GGGCTATCATA
*
2002 TAGGTGCATATTCAGTAGGGC---CATA
1 TAGTTGCATATTCAGTAGGGCTATCATA
2027 TAGTTGC
1 TAGTTGC
2034 TTCATATAGT
Statistics
Matches: 776, Mismatches: 33, Indels: 116
0.84 0.04 0.13
Matches are distributed among these distances:
24 6 0.01
25 225 0.29
26 185 0.24
27 12 0.02
29 1 0.00
30 24 0.03
31 322 0.41
32 1 0.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (28 bp):
TAGTTGCATATTCAGTAGGGCTATCATA
Found at i:1856 original size:16 final size:15
Alignment explanation
Indices: 1713--1943 Score: 79
Period size: 15 Copynumber: 15.3 Consensus size: 15
1703 CATATAGTTG
*
1713 CATATTCAGTAGGGT
1 CATATTCAGTAGGGC
* * *
1728 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
1744 CATATTCAGTAGGGC
1 CATATTCAGTAGGGC
* * *
1759 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
1775 CATATTCAGTAGGGC
1 CATATTCAGTAGGGC
* * *
1790 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
1806 CATATTCAGTAGGGC
1 CATATTCAGTAGGGC
* * *
1821 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
1837 CATATTCAGTAGGAGC
1 CATATTCAGTAGG-GC
*
1853 CATA-T-AGT--TG-
1 CATATTCAGTAGGGC
1863 CATATTCAGTAGGGC
1 CATATTCAGTAGGGC
* * *
1878 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
1894 CATATTCAGTAGGGC
1 CATATTCAGTAGGGC
* * *
1909 CATAATCATATAGTTG-
1 CATATTCA-GTAG-GGC
*
1925 CATATTCAGTAGGGT
1 CATATTCAGTAGGGC
1940 CATA
1 CATA
1944 ATCATATAGT
Statistics
Matches: 154, Mismatches: 38, Indels: 48
0.64 0.16 0.20
Matches are distributed among these distances:
10 4 0.03
11 2 0.01
12 3 0.02
14 9 0.06
15 66 0.43
16 64 0.42
17 6 0.04
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (15 bp):
CATATTCAGTAGGGC
Found at i:2041 original size:38 final size:39
Alignment explanation
Indices: 1999--2072 Score: 123
Period size: 38 Copynumber: 1.9 Consensus size: 39
1989 AGTACGGGTT
*
1999 ATATAGGTGCATATTCAGTAG-GGCCATATAGTTGCTTC
1 ATATAGGTGCATATTCAGTAGAGGACATATAGTTGCTTC
*
2037 ATATAGTTGCATATTCAGTAGAGGACATATAGTTGC
1 ATATAGGTGCATATTCAGTAGAGGACATATAGTTGC
2073 ATATTCAGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
38 20 0.61
39 13 0.39
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (39 bp):
ATATAGGTGCATATTCAGTAGAGGACATATAGTTGCTTC
Found at i:2044 original size:64 final size:64
Alignment explanation
Indices: 1971--2097 Score: 202
Period size: 64 Copynumber: 2.0 Consensus size: 64
1961 TCAGTAGGGG
**
1971 TCATATAGTTGCATATTCAGTACG-GGTTATATAGGTGCATATTCAGTAGGGCCATATAGTTGCT
1 TCATATAGTTGCATATTCAGTA-GAGGACATATAGGTGCATATTCAGTAGGGCCATATAGTTGCT
* *
2035 TCATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTATGGCCATATAGTTGC
1 TCATATAGTTGCATATTCAGTAGAGGACATATAGGTGCATATTCAGTAGGGCCATATAGTTGC
2098 ATATTCAGTA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 1 0.02
64 57 0.98
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (64 bp):
TCATATAGTTGCATATTCAGTAGAGGACATATAGGTGCATATTCAGTAGGGCCATATAGTTGCT
Found at i:2066 original size:26 final size:26
Alignment explanation
Indices: 2036--2450 Score: 426
Period size: 26 Copynumber: 15.5 Consensus size: 26
2026 ATAGTTGCTT
* *
2036 CATATAGTTGCATATTCAGTAGAGGA
1 CATATAGTTGCATATTCAGTAGGGGC
*
2062 CATATAGTTGCATATTCAGTA-TGGC
1 CATATAGTTGCATATTCAGTAGGGGC
*
2087 CATATAGTTGCATATTCAGTA-GCGC
1 CATATAGTTGCATATTCAGTAGGGGC
* * *
2112 CATATTAGTTGCATATCCAGTATGGTC
1 CATA-TAGTTGCATATTCAGTAGGGGC
*
2139 ATAATCATATAGTTGCATATTTAGTAGGGGC
1 -----CATATAGTTGCATATTCAGTAGGGGC
* *
2170 CATATAGTTGCATATTCAGTATGGTC
1 CATATAGTTGCATATTCAGTAGGGGC
* **
2196 ATAATCATATAGTTGCATGTTCAGTAGGATC
1 -----CATATAGTTGCATATTCAGTAGGGGC
*
2227 ATAATCATATAGTTGCATATTCAGTAGGGGT
1 -----CATATAGTTGCATATTCAGTAGGGGC
*
2258 CATATAGTTGCATATTCAGTAGGGGT
1 CATATAGTTGCATATTCAGTAGGGGC
*
2284 CATATAGTTGCATATTCAGTAGGGGT
1 CATATAGTTGCATATTCAGTAGGGGC
2310 CATATAGTTGCATATTCAGTAGGGGC
1 CATATAGTTGCATATTCAGTAGGGGC
**
2336 CATATAGTTGCATATTCAGT-GATGC
1 CATATAGTTGCATATTCAGTAGGGGC
* *
2361 CATATAGTTGCAAATTCAGTA-GGGT
1 CATATAGTTGCATATTCAGTAGGGGC
* *
2386 CATATCGTCGCATATTCAGTAGGGGC
1 CATATAGTTGCATATTCAGTAGGGGC
* *
2412 CATATAGTTGTATATTCAGTA-GGGT
1 CATATAGTTGCATATTCAGTAGGGGC
*
2437 CATACAGTTGCATA
1 CATATAGTTGCATA
2451 ATCATATAGT
Statistics
Matches: 337, Mismatches: 38, Indels: 29
0.83 0.09 0.07
Matches are distributed among these distances:
25 85 0.25
26 178 0.53
27 2 0.01
31 68 0.20
32 4 0.01
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (26 bp):
CATATAGTTGCATATTCAGTAGGGGC
Found at i:2066 original size:90 final size:90
Alignment explanation
Indices: 1945--2123 Score: 279
Period size: 90 Copynumber: 2.0 Consensus size: 90
1935 AGGGTCATAA
* * **
1945 TCATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTACGGGTTATATAGGTGCA
1 TCATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTA-GGGCCATATAGGTGCA
*
2010 TATTCAGTAGGGCCATA-TAGTTGCT
65 TATTCAGTAGCGCCATATTAGTTGCT
* *
2035 TCATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTATGGCCATATAGTTGCAT
1 TCATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTAGGGCCATATAGGTGCAT
2100 ATTCAGTAGCGCCATATTAGTTGC
66 ATTCAGTAGCGCCATATTAGTTGC
2124 ATATCCAGTA
Statistics
Matches: 81, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
89 28 0.35
90 53 0.65
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (90 bp):
TCATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTAGGGCCATATAGGTGCAT
ATTCAGTAGCGCCATATTAGTTGCT
Found at i:2152 original size:31 final size:31
Alignment explanation
Indices: 2035--2533 Score: 270
Period size: 26 Copynumber: 17.6 Consensus size: 31
2025 TATAGTTGCT
2035 TCATATAGTTGCATATTCAGTAGAGG-----A
1 TCATATAGTTGCATATTCAGTAG-GGTCATAA
*
2062 -CATATAGTTGCATATTCAGTATGG-C----
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2087 -CATATAGTTGCATATTCAGTAGCG-C--CA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2114 T-AT-TAGTTGCATATCCAGTATGGTCATAA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2143 TCATATAGTTGCATATTTAGTAGGGGC----
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2170 -CATATAGTTGCATATTCAGTATGGTCATAA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2200 TCATATAGTTGCATGTTCAGTAGGATCATAA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2231 TCATATAGTTGCATATTCAGTAGGG-----G
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2257 TCATATAGTTGCATATTCAGTAGGG-----G
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2283 TCATATAGTTGCATATTCAGTAGGG-----G
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2309 TCATATAGTTGCATATTCAGTAGGGGC----
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2336 -CATATAGTTGCATATTCAGT---G--AT-G
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2360 CCATATAGTTGCAAATTCAGTAGGGTCAT-A
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
* *
2390 TC-----GTCGCATATTCAGTAGGGGC----
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2412 -CATATAGTTGTATATTCAGTAGGGTCATACAGTTGCATAA
1 TCATATAGTTGCATATTCAGTA-GG-------G-T-CATAA
* **
2452 TCATATAGTTGCATATTCAGTATGGTTTTAA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
2483 TCATATAGTTGCATATTCAGTAGGGTCATAA
1 TCATATAGTTGCATATTCAGTAGGGTCATAA
*
2514 TTATATAGTTGCATATTCAG
1 TCATATAGTTGCATATTCAG
2534 GGGCCTCTAA
Statistics
Matches: 390, Mismatches: 37, Indels: 86
0.76 0.07 0.17
Matches are distributed among these distances:
21 1 0.00
23 1 0.00
25 61 0.16
26 171 0.44
27 5 0.01
28 1 0.00
29 2 0.01
30 5 0.01
31 118 0.30
32 1 0.00
33 1 0.00
34 1 0.00
36 1 0.00
40 1 0.00
41 20 0.05
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (31 bp):
TCATATAGTTGCATATTCAGTAGGGTCATAA
Found at i:2461 original size:16 final size:16
Alignment explanation
Indices: 2436--2528 Score: 68
Period size: 16 Copynumber: 5.9 Consensus size: 16
2426 TTCAGTAGGG
*
2436 TCATACAGTTGCATAA
1 TCATATAGTTGCATAA
*
2452 TCATATAGTTGCATAT
1 TCATATAGTTGCATAA
* *
2468 TCAGTATGGTT--TTAA
1 TCA-TATAGTTGCATAA
*
2483 TCATATAGTTGCATAT
1 TCATATAGTTGCATAA
* *
2499 TCA-GTAG-GGTCATAA
1 TCATATAGTTG-CATAA
*
2514 TTATATAGTTGCATA
1 TCATATAGTTGCATA
2529 TTCAGGGGCC
Statistics
Matches: 57, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
14 7 0.12
15 14 0.25
16 29 0.51
17 7 0.12
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (16 bp):
TCATATAGTTGCATAA
Found at i:2467 original size:51 final size:52
Alignment explanation
Indices: 2036--2450 Score: 376
Period size: 51 Copynumber: 7.8 Consensus size: 52
2026 ATAGTTGCTT
* * * *
2036 CATATAGTTGCATATTCAGTAGAGGACATATAGTTGCATATTCAGTA-TGGC
1 CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATATTCAGTAGGGGC
* * * * * *
2087 CATATAGTTGCATATTCAGTA-GCGCCATATTAGTTGCATATCCAGTATGGTC
1 CATATAGTTGCATATTCAGTAGGGGTCATA-CAGTTGCATATTCAGTAGGGGC
* * * * *
2139 ATAATCATATAGTTGCATATTTAGTAGGGGCCATATAGTTGCATATTCAGTATGGTC
1 -----CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATATTCAGTAGGGGC
* * *
2196 ATAATCATATAGTTGCATGTTCAGTA-GGATCATAATCATATAGTTGCATATTCAGTAGGGGT
1 -----CATATAGTTGCATATTCAGTAGGGGTCAT-A-C----AGTTGCATATTCAGTAGGGGC
* *
2258 CATATAGTTGCATATTCAGTAGGGGTCATATAGTTGCATATTCAGTAGGGGT
1 CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATATTCAGTAGGGGC
* * **
2310 CATATAGTTGCATATTCAGTAGGGGCCATATAGTTGCATATTCAGT-GATGC
1 CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATATTCAGTAGGGGC
* *
2361 CATATAGTTGCAAATTCAGTA-GGGTCATATC-GTCGCATATTCAGTAGGGGC
1 CATATAGTTGCATATTCAGTAGGGGTCATA-CAGTTGCATATTCAGTAGGGGC
*
2412 CATATAGTTGTATATTCAGTA-GGGTCATACAGTTGCATA
1 CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATA
2451 ATCATATAGT
Statistics
Matches: 313, Mismatches: 33, Indels: 36
0.82 0.09 0.09
Matches are distributed among these distances:
50 26 0.08
51 96 0.31
52 68 0.22
56 5 0.02
57 87 0.28
58 13 0.04
62 18 0.06
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.34
Consensus pattern (52 bp):
CATATAGTTGCATATTCAGTAGGGGTCATACAGTTGCATATTCAGTAGGGGC
Found at i:3880 original size:329 final size:326
Alignment explanation
Indices: 3204--4047 Score: 795
Period size: 329 Copynumber: 2.5 Consensus size: 326
3194 GTAGAAATAA
* * * *
3204 TCCTTGAAATATCTATATTTATAAAACCAAATCTCAGCTACATTGGATTCACAGATTAGTTTCTA
1 TCCTTGAAATATCTATATTTATAAAACCAAATCTCAGCCACATTGGATTTA-AGATTTGTTTTTA
* *
3269 CGGGCACTTAAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAATGGAAAAA-TGAT
65 C--G-A-GTAAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAAATGGAAAAACT-AT
* * * *
3333 ATTAGAAGCGTGAAAAATCTTTCAATTTTTTTTGGCGTTGAGTTATGTAATTTTTCTGAGTATTG
124 ATTAGAAGCGTGAAAAACCCTTCAA-TTTTTTTGGCGTTGAATTATAT-ATTTTTCTGAGTATTG
** * * * * *
3398 CGGCAAAAAATTTAGGAAAAAATTTTCGGGTTAGTTTTTCGAAATTTTAACTGAAATCGTACACT
187 CGGCAAAAAATCGAAGAAAAAATTCTCGGGTCAGTTTTTCAAAATTTTAACCGAAATCGTACACT
** * * * * * * * *
3463 AACCATCACATTTTTTTTTACTAAAGACGCGTTTCGGGACCCCGGTTTAGTTTTGCATGATTTAA
252 AACCATCACA-GGTTTTTGACTAAAAACGCGATTCAGCACCCCGGCTTAATTTTGCAAGATTTAA
* *
3528 GGTAGAAAGAC
316 GGAACAAAGAC
* * ** ** *
3539 TCATTAAAATATCTATATTTATTTAATTAAATCTCAGCCACGTTGGATTTAAGAATTTGTTTTTA
1 TCCTTGAAATATCTATATTTATAAAACCAAATCTCAGCCACATTGGATTTAAG-ATTTGTTTTTA
* *
3604 CGAGTAAATCATGTTTCGATTTAATTAGAAATAAATTCGGGAAAAAAA-GGAAAAACTATATTAT
65 CGAGTAAATCTTGTTTCGATTTAATTAGAAATAAATTC-GGAAAAAAATGGAAAAACTATATTAG
* **
3668 AAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTTAATTATATATTATTTCTGAGTATTTTGGCAA
129 AAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATT-TTTCTGAGTATTGCGGCAA
* * * **
3733 AAAATCGAAGAAAAACTTCTCGGGTCATTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCA
193 AAAATCGAAGAAAAAATTCTCGGGTCAGTTTTT-CAAAATTTTAACCGAAATCGTACACTAACCA
* *** ***
3798 TTCAC-GGTTTTTGGCTAAAAACGC-ATTCAGCAGTGGCGGCTTAATTTTGCAAGATTTTTTGAA
257 -TCACAGGTTTTTGACTAAAAACGCGATTCAGCA-CCCCGGCTTAATTTTGCAAGATTTAAGGAA
3861 CAAAGAC
320 CAAAGAC
** * * * *
3868 TCCTTGAAATATCTATA-TTATCGAACCAAATGTTAGCCACATTAGATATATATAAGGATTTGTA
1 TCCTTGAAATATCTATATTTATAAAACCAAATCTCAGCCACATT-G-GAT-T-TAA-GATTTGTT
* ** * * *
3932 TTTACGAGCATCTCTTGTTTTGATTTAATTA-ATAATTAATTC-GAAAACAAATGGAAAAACGAT
61 TTTACGAGTAAATCTTGTTTCGATTTAATTAGA-AATAAATTCGGAAAA-AAATGGAAAAACTAT
* * * *
3995 ATTAGAAGCGTG-AAAAGCGTGTCAATCTTTTTGGCATTGAATTATATATTTTT
124 ATTAGAAGCGTGAAAAACCCT-TCAATTTTTTTGGCGTTGAATTATATATTTTT
4048 TTCTAAATAT
Statistics
Matches: 416, Mismatches: 78, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
328 27 0.06
329 118 0.28
330 64 0.15
331 60 0.14
332 91 0.22
333 2 0.00
334 2 0.00
335 52 0.12
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (326 bp):
TCCTTGAAATATCTATATTTATAAAACCAAATCTCAGCCACATTGGATTTAAGATTTGTTTTTAC
GAGTAAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAACTATATTAGAA
GCGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTTCTGAGTATTGCGGCAAAAA
ATCGAAGAAAAAATTCTCGGGTCAGTTTTTCAAAATTTTAACCGAAATCGTACACTAACCATCAC
AGGTTTTTGACTAAAAACGCGATTCAGCACCCCGGCTTAATTTTGCAAGATTTAAGGAACAAAGA
C
Done.