Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014627.1 Corchorus olitorius cultivar O-4 contig14660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12278
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:1488 original size:19 final size:17

Alignment explanation


    Indices: 1464--1498  Score: 52
    Period size: 19  Copynumber: 1.9  Consensus size: 17

       1454 TTTATACAGT

                               
       1464 TAGAAAGACAAATAGCTTG
          1 TAGAAAGA-AAAT-GCTTG

                            
       1483 TAGAAAGAAAATGCTT
          1 TAGAAAGAAAATGCTT

       1499 AAATATATTA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    4  0.25
  18    4  0.25
  19    8  0.50

ACGTcount: A:0.49, C:0.09, G:0.20, T:0.23


Consensus pattern (17 bp):   
TAGAAAGAAAATGCTTG

Found at i:11321 original size:15 final size:15

Alignment explanation


    Indices: 11301--11329  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

      11291 AGTGAAATGA

                           
      11301 ATATTATTTGCTAGT
          1 ATATTATTTGCTAGT

                          
      11316 ATATTATTTGCTAG
          1 ATATTATTTGCTAG

      11330 ATCGTGATTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.28, C:0.07, G:0.14, T:0.52


Consensus pattern (15 bp):   
ATATTATTTGCTAGT
Done.