Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014628.1 Corchorus olitorius cultivar O-4 contig14661, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19427
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Found at i:14071 original size:62 final size:62

Alignment explanation


    Indices: 13969--14092  Score: 221
    Period size: 62  Copynumber: 2.0  Consensus size: 62

      13959 CAATGTAATC

                *         *                   *                           
      13969 TCATTTGTATAGTTGCTAAACAATGTCAATCACATCACTACCGCACCGCTCTACTAAACACA
          1 TCATCTGTATAGTTACTAAACAATGTCAATCACACCACTACCGCACCGCTCTACTAAACACA

                                                                          
      14031 TCATCTGTATAGTTACTAAACAATGTCAATCACACCACTACCGCACCGCTCTACTAAACACA
          1 TCATCTGTATAGTTACTAAACAATGTCAATCACACCACTACCGCACCGCTCTACTAAACACA

      14093 ACAATTCTAC


Statistics
Matches: 59,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  62   59  1.00

ACGTcount: A:0.35, C:0.31, G:0.09, T:0.26


Consensus pattern (62 bp):   
TCATCTGTATAGTTACTAAACAATGTCAATCACACCACTACCGCACCGCTCTACTAAACACA
Done.