Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014631.1 Corchorus olitorius cultivar O-4 contig14664, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2846
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39


Found at i:1408 original size:30 final size:30

Alignment explanation


    Indices: 1374--1434  Score: 104
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1364 GTAACTAAGC

                              *  *        
       1374 AGCAGTTGAAAGCTGAGCGGCGGAGGGCAG
          1 AGCAGTTGAAAGCTGAGCAGCAGAGGGCAG

                                          
       1404 AGCAGTTGAAAGCTGAGCAGCAGAGGGCAG
          1 AGCAGTTGAAAGCTGAGCAGCAGAGGGCAG

             
       1434 A
          1 A

       1435 CTCATAGTGG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.31, C:0.16, G:0.43, T:0.10


Consensus pattern (30 bp):   
AGCAGTTGAAAGCTGAGCAGCAGAGGGCAG
Done.