Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014636.1 Corchorus olitorius cultivar O-4 contig14669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86294

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1474--1504
16
1.9
16
100
0
62
45
3
0
51
1.17
1471--1509
20
2.0
20
94
0
69
41
5
0
53
1.23
12761--12846
40
2.2
40
93
0
145
25
23
18
32
1.97
15184--16518
322
4.2
315
82
4
1514
32
15
17
34
1.91
15184--16518
642
2.1
626
83
5
1612
32
15
17
34
1.91
16755--21419
320
14.6
321
85
4
6009
33
15
17
34
1.91
20392--21419
324
3.2
321
85
4
1368
31
14
18
34
1.91
21177--21670
250
2.0
252
86
4
701
34
13
17
34
1.89
21412--22894
322
4.6
320
84
5
1742
33
14
16
34
1.90
21433--24434
642
4.7
643
75
9
2290
33
15
17
33
1.91
22611--23182
288
2.0
288
86
5
800
32
15
18
33
1.93
22898--24434
321
4.8
321
87
2
2131
33
15
17
33
1.92
31274--31384
55
2.0
55
100
0
222
46
20
10
21
1.81
33249--33274
11
2.4
11
100
0
52
88
0
11
0
0.52
37009--37088
39
2.1
39
95
0
142
32
20
7
40
1.80
38384--38688
102
3.0
98
83
8
364
24
25
15
35
1.94
49465--49512
10
4.6
10
84
10
53
66
2
31
0
1.03
56080--56125
2
23.0
2
90
0
74
45
2
0
52
1.13
62289--62391
52
2.0
52
100
0
206
33
15
8
42
1.78
70252--70284
1
33.0
1
100
0
66
100
0
0
0
0.00
70817--70850
12
2.8
12
86
0
50
64
8
2
23
1.36
75101--75131
16
1.9
16
93
0
53
32
29
12
25
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83110--83134
12
2.1
12
100
0
50
68
8
24
0
1.16
86261--86294
13
2.7
12
86
13
50
0
11
23
64
1.26

Tables:   1

The End!