Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014640.1 Corchorus olitorius cultivar O-4 contig14673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5745
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Found at i:12 original size:2 final size:2
Alignment explanation
Indices: 6--46 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
1 TCCTC
*
6 CT CT CT CT CT CC CT C- CT C- CT CT C- CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
45 CT
1 CT
47 GTTTTTTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
1 3 0.09
2 31 0.91
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (2 bp):
CT
Found at i:252 original size:68 final size:68
Alignment explanation
Indices: 138--398 Score: 391
Period size: 68 Copynumber: 3.8 Consensus size: 68
128 GAGCACCACC
*
138 GTGTCTTCTCGTGTACCTTCGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTGT
1 GTGTCTTCTCGTGTACATTCGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTGT
203 CGT
66 CGT
* * * *
206 GTGTCTTCTCCTGTACATTCGTGTCTGGCCTCGCCTCACTGTGGAGGATATGTCTTTGTGTGTGT
1 GTGTCTTCTCGTGTACATTCGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTGT
*
271 CAT
66 CGT
*
274 GTGTCTTCTCGTGTA-ACTTTGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTG
1 GTGTCTTCTCGTGTACA-TTCGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTG
*
338 TTGT
65 TCGT
* **
342 GTGTCTTCTTGTGTATTTTCGTGTCTGGCCTCGCGC-CACTGCGGAGGCTATGTCTTC
1 GTGTCTTCTCGTGTACATTCGTGTCTGGCCTCGC-CTCACTGCGGAGGCTATGTCTTC
399 TCATGTATCT
Statistics
Matches: 174, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
67 1 0.01
68 172 0.99
69 1 0.01
ACGTcount: A:0.08, C:0.25, G:0.28, T:0.39
Consensus pattern (68 bp):
GTGTCTTCTCGTGTACATTCGTGTCTGGCCTCGCCTCACTGCGGAGGCTATGTCTTCGTGTGTGT
CGT
Found at i:415 original size:49 final size:49
Alignment explanation
Indices: 343--465 Score: 169
Period size: 49 Copynumber: 2.5 Consensus size: 49
333 GTGTGTTGTG
343 TGTCTTCTTGTGTAT-TTTCGTGTCTGGCCTCGCGC-CACTGCGGAGGCTA
1 TGTCTTCTTGTGTATCTTT-GTGTCTGGCCTCGC-CTCACTGCGGAGGCTA
** **
392 TGTCTTCTCATGTATCTTTGTGTCTGGCCTCGCCTCACTGTTGAGGCTA
1 TGTCTTCTTGTGTATCTTTGTGTCTGGCCTCGCCTCACTGCGGAGGCTA
*
441 TGTCTTCTTGTGTATCTTCGTGTCT
1 TGTCTTCTTGTGTATCTTTGTGTCT
466 TCGCGTGTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
48 1 0.02
49 61 0.94
50 3 0.05
ACGTcount: A:0.08, C:0.25, G:0.24, T:0.42
Consensus pattern (49 bp):
TGTCTTCTTGTGTATCTTTGTGTCTGGCCTCGCCTCACTGCGGAGGCTA
Found at i:2249 original size:283 final size:282
Alignment explanation
Indices: 1719--2249 Score: 748
Period size: 283 Copynumber: 1.9 Consensus size: 282
1709 CAATTTTTTC
* *
1719 ACACAATAGTCGTAAAAATTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
1 ACACAATACTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
* * * *
1784 ATATCATTTTTTTCTATTTTTTTAATTAATTTCTAATAAAATCGAAACACGATTCTGATGCTCGT
66 ATATCAGTTTTTCCTATTTTTTGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGT
1849 AAAACCAAATCCTTAAATTCAATGTGGCTGAGATTTGCTTAGATGAATATAGATATTTCAACGAG
131 AAAACCAAATCCTTAAATTCAATGTGGCTGAGATTTGCTTAGATGAATATAGATATTTCAAC-AG
* * * * ***
1914 TCTCGGCGTAAAAAATCATGCAAAACTGTGCTAAGCCCGGAACGTGTTTTTAGTAAAAAACTGTG
195 TCTCGGCGTAAAAAATCATGAAAAACTGAGCGAAGCCCGAAACACCTTTTTAGTAAAAAACTGTG
1979 ATGGTTAATACACGATTTCAGGT
260 ATGGTTAATACACGATTTCAGGT
2002 ACACAATACTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCGTT-T
1 ACACAATACTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGC-TTCT
2066 AATATC-GTTTTTCCTATTTTTTGGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCT
65 AATATCAGTTTTTCCTATTTTTT-GAATTAATTTCTAATA-AAATCGAAACAAGATTCTGATGCT
** * * * *
2130 CGTAAAA-CATGTCTTTAAA-TCAATTGTGGTTGAGATTTGGTTTGATGAATATAGATATTTCAA
128 CGTAAAACCAAATCCTTAAATTCAA-TGTGGCTGAGATTTGCTTAGATGAATATAGATATTTCAA
* * * **
2193 -TGTCTTGGCGTCAAAAATCATGAAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAG
192 CAGTCTCGGCGTAAAAAATCATGAAAAACTGAG-CGAAG-CCCGAAACACCTTTTTAG
2250 CCAAAAACCG
Statistics
Matches: 218, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
281 27 0.12
282 20 0.09
283 139 0.64
284 32 0.15
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (282 bp):
ACACAATACTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
ATATCAGTTTTTCCTATTTTTTGAATTAATTTCTAATAAAATCGAAACAAGATTCTGATGCTCGT
AAAACCAAATCCTTAAATTCAATGTGGCTGAGATTTGCTTAGATGAATATAGATATTTCAACAGT
CTCGGCGTAAAAAATCATGAAAAACTGAGCGAAGCCCGAAACACCTTTTTAGTAAAAAACTGTGA
TGGTTAATACACGATTTCAGGT
Found at i:2516 original size:2 final size:2
Alignment explanation
Indices: 2509--2538 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2499 GCTTAGATGA
2509 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2539 TTCAACGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3248 original size:331 final size:331
Alignment explanation
Indices: 2002--3533 Score: 2037
Period size: 331 Copynumber: 4.6 Consensus size: 331
1992 GATTTCAGGT
* *
2002 ACACAATACTCGTAAAAAATATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCGTT-T
1 ACACAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGC-TTCT
*
2066 AATATCGTTTTTCCTATTTTTTGGAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTC
65 AATATCGTTTTTCCTATTTTTT-TAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTC
* *
2131 GT-AAAACATGTCTTTAAATCAATTGTGGTTGAGATTTGGTTTGATGAATATAGATATTTC-AA-
129 GTAAAAACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAG
* * *
2193 TGTCTTGGCGTCAAAAATCATGAAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAGCCAAAAAC
194 AGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAGCCAAAAAC
** * *
2258 CGTAATGGATAGTACATAATTTCGGCTAAAAATTTGCAAAAACTGAGCCGAAAAAGTTTTTCTTC
259 CGTAATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAA-TTTTTCCTC
*
2323 AATTTTTTG
323 AATTTTTTC
* * *
2332 ACATAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGCCTTTTCATGCTTCTA
1 ACACAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
** * * *
2397 ATATTATTTTTCCTATTTTTTTGAATTAATTTCTAGTAAAAAACGAAACAAGATTCTGATGCTCG
66 ATATCGTTTTTCCTATTTTTTT-AATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCG
** * * *
2462 TAAAAACAAATCCTTAAATCCAATGTGACTGAGATTTGCTTAGATGAATATAT-ATATATATATA
130 TAAAAACACGTCTTTAAAT-CAAT-TG--T--G----GC-T-GA-G-AT-T-TGGT-T-T-GAT-
* * * ** * * * * *
2526 TATATATATATATTTCAACGAGTCTTGGCGTTAAAAATTATGCAAAATTGTGTCAGGG-CCCGAA
175 GA-ATATAGATATTTCAAAGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAA
*** * *
2590 ACGTATTTTTAGTCAAAAA-C--AAT-GATAGTACACGATTTTGGCTAAAATTTTGCAAAAACTG
239 ACACCTTTTTAGCCAAAAACCGTAATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAACTG
*
2651 AGTCGAAAAATTTTTCCTCAATTTTTTC
304 AGCCGAAAAATTTTTCCTCAATTTTTTC
* *
2679 ACACAATACTCGTAAAAATTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
1 ACACAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
*
2744 ATATCGTTTTTCCTATTTTTTTTAATTAATTTCTAATAGAAATCGAAACAAGATTCCGATGCTCG
66 ATATCGTTTTTCCTA-TTTTTTTAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCG
* *
2809 TAAAAACACGTCTTTAAATCAATCGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAGGA
130 TAAAAACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGA
* ** * * *
2874 GTCTTGGCGCAAAAAATCATGCAAAACTGAGCCGGCCCCCCGGAACACCTTTTTGGCCAAAAATC
195 GTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAGCCAAAAACC
* *
2939 GTGATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAGCCGAAAAATTTTTCCTCAA
260 GTAATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAA
3004 TTTTTTC
325 TTTTTTC
* *
3011 ACACAATAGTCGTAAAAATTATATAATTCAATGCTAAAAAGATTAAAAGGCTTTTCACGCTTCTA
1 ACACAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
* *
3076 ATATCGTTTTTCATATTTTTTTACTTAATTTCTAATAGAAATCGAAACAAGATT-TCGATGCTCG
66 ATATCGTTTTTCCTATTTTTTTAATTAATTTCTAATAGAAATCGAAACAAGATTCT-GATGCTCG
*
3140 TAAAAACACGTCTTTAAATAAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGA
130 TAAAAACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGA
*
3205 GTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACACCTTTTTAGCCAAAAACC
195 GTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAGCCAAAAACC
* *
3270 GTGATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAATTGAGCCGAAAAATTTTTCCTCAA
260 GTAATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAA
3335 TTTTTTC
325 TTTTTTC
* * *
3342 ACACAATAGTCGGAAAAAGTATATAATTCAATGCGTAAAAAGATTAATAGGCTTTTCACGCTTCT
1 ACACAATAGTCGTAAAAAGTATATAATTCAATGC-CAAAAAGATTAAAAGGCTTTTCACGCTTCT
* * *
3407 AATATTGTTTTTTCCTATTTTTTTGAATTAATTTCTAATAAAAATCGAATCAAGATTCTGATGCT
65 AATATCG-TTTTTCCTATTTTTTT-AATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCT
* * * * *
3472 CGT-AAAA-ATGTCATTGAATTAATTGTGCCTGAGATTTGGTTTGATGAATATAGATATTTCAA
128 CGTAAAAACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAA
3534 GTTTTGATGA
Statistics
Matches: 1060, Mismatches: 104, Indels: 74
0.86 0.08 0.06
Matches are distributed among these distances:
327 44 0.04
328 20 0.02
329 5 0.00
330 117 0.11
331 290 0.27
332 231 0.22
333 23 0.02
334 39 0.04
335 4 0.00
336 1 0.00
337 3 0.00
341 2 0.00
342 1 0.00
343 3 0.00
344 1 0.00
345 3 0.00
346 6 0.01
347 145 0.14
348 51 0.05
349 5 0.00
350 1 0.00
351 13 0.01
352 22 0.02
353 30 0.03
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (331 bp):
ACACAATAGTCGTAAAAAGTATATAATTCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTA
ATATCGTTTTTCCTATTTTTTTAATTAATTTCTAATAGAAATCGAAACAAGATTCTGATGCTCGT
AAAAACACGTCTTTAAATCAATTGTGGCTGAGATTTGGTTTGATGAATATAGATATTTCAAAGAG
TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACACCTTTTTAGCCAAAAACCG
TAATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAGCCGAAAAATTTTTCCTCAAT
TTTTTC
Found at i:3877 original size:574 final size:572
Alignment explanation
Indices: 2988--4052 Score: 1547
Period size: 575 Copynumber: 1.9 Consensus size: 572
2978 AATTGAGCCG
* *
2988 AAAAATTTTTCCTCAATTTTTTCACACAATAGTCGTAAAAATTATATAATTCAATGCTAAAAAGA
1 AAAAAGTTTTCCTCAATTTTTTCACACAATAGTCGTAAAAAGTATATAATTCAATGCTAAAAAGA
* * *
3053 TTAAAAGGCTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTACTTAATTTCTAATAGAAAT
66 TTAAAAGGCTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTAATTAATTTCTAATAAAAAA
** * *
3118 CGAAACAAGATTTCGATGCTCGTAAAAACACGTCTTTAAATAAATTGTGGCTGAGATTTGGTTTG
131 CGAAACAAGATTTCGATGCTCGTAAAAACAAATCCTTAAATAAATTGTGACTGAGATTTGGTTTG
3183 ATGAATATAGATATTTCAAAGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGG
196 ATGAATATAGATATTTCAAAGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGG
* *
3248 AACACCTTTTTAGCCAAAAACCGTGATGGATAGTACACGATTTCGGCTAAAATTTTGCAAAAATT
261 AACACCTTTTTAGCCAAAAACCGTGATGGATAGCACACGATTTCGGCTAAAATTTTGCAAAAACT
3313 GAGCC-GAAAAATTTTTCC-TCAATTTTTTCACACAATAGTCGGAAAAAG-TATATAATTCAATG
326 GAGCCAGAAAAATTTTTCCTTC-ATTTTTTCACACAATAGTCGGAAAAAGCTATATAATTCAATG
* * *
3375 CGTAAAAAGATTAATAGGCTTTTCACGCTTCTAATATTGTTTTTTCCTATTTTTTTGAATTAATT
390 C-CAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAATG-TTTTTCCTATTTTTTTGAATTAATT
3440 TCTAATAAAAATCG-AATCAAGATTCTGATGCTCGTAAAAATGTCATTGAATTAATTGTGCCTGA
453 TCTAATAAAAA-CGAAAT-AAGATTCTGATGCTCGTAAAAATGTCATTGAATTAATTGTGCCTGA
3504 GATTTGGTTTGATGAATATAGATATTTCAAGTTTTGATGAATATAGATATGCTCGTA
516 GATTTGGTTTGATGAATATAGATATTTCAAGTTTTGATGAATATAGATATGCTCGTA
*
3561 AAAAAGTTTTCCTCAATTTTTTGACACAATAGTCGTAAAAAGTATATAATTCAATGAC-ATAAAA
1 AAAAAGTTTTCCTCAATTTTTTCACACAATAGTCGTAAAAAGTATATAATTCAATG-CTA-AAAA
* * *
3625 -ATTAAAAGGCTTTTCGCGCTTCTAATATTGTTTTTCCTATTTTTTTGAATTAATTTCTAATAAA
64 GATTAAAAGGCTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTT-AATTAATTTCTAATAAA
* ** *
3689 AAACGAAACAAGA-TTCTGATGCTCGTAAAAAAGAAATCCTTAAATCCATTGTGATTGAGATTTG
128 AAACGAAACAAGATTTC-GATGCTCGT-AAAAACAAATCCTTAAATAAATTGTGACTGAGATTTG
* * * * * *
3753 GTTAT-ATGAATATATATATTTCAACGAGTCTTGGCGCCAAAAATTATGCAAAACTGTGTCTGGG
191 GTT-TGATGAATATAGATATTTCAAAGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGG
*** * *** *
3817 -CCCGGAACGTGTTTTTAGCCAAAAACTGTG-TTTTTAGCCACACGATTTCGGTTAAAATTTTGC
255 CCCCGGAACACCTTTTTAGCCAAAAACCGTGATGGATAG-CACACGATTTCGGCTAAAATTTTGC
* * * *
3880 AAAAACTGAGCCAGAAAAATTTTTCCTTCATTTTTTGACAGAATAGTTGTAAAAAGCTATATAAT
319 AAAAACTGAGCCAGAAAAATTTTTCCTTCATTTTTTCACACAATAGTCGGAAAAAGCTATATAAT
* * * *
3945 TCGATTCCAAAAAGATTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTATTTTTTTGTATT
384 TCAATGCCAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAATGTTTTTCCTATTTTTTTGAATT
*
4010 AATTTCTAATAAAAACGAAATAGGATTCTGATGCTCGTAAAAA
449 AATTTCTAATAAAAACGAAATAAGATTCTGATGCTCGTAAAAA
4053 ATAAATCCTC
Statistics
Matches: 436, Mismatches: 45, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
573 127 0.29
574 139 0.32
575 154 0.35
576 16 0.04
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (572 bp):
AAAAAGTTTTCCTCAATTTTTTCACACAATAGTCGTAAAAAGTATATAATTCAATGCTAAAAAGA
TTAAAAGGCTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTAATTAATTTCTAATAAAAAA
CGAAACAAGATTTCGATGCTCGTAAAAACAAATCCTTAAATAAATTGTGACTGAGATTTGGTTTG
ATGAATATAGATATTTCAAAGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGG
AACACCTTTTTAGCCAAAAACCGTGATGGATAGCACACGATTTCGGCTAAAATTTTGCAAAAACT
GAGCCAGAAAAATTTTTCCTTCATTTTTTCACACAATAGTCGGAAAAAGCTATATAATTCAATGC
CAAAAAGATTAAAAGGCTTTTCACGCTTCTAATAATGTTTTTCCTATTTTTTTGAATTAATTTCT
AATAAAAACGAAATAAGATTCTGATGCTCGTAAAAATGTCATTGAATTAATTGTGCCTGAGATTT
GGTTTGATGAATATAGATATTTCAAGTTTTGATGAATATAGATATGCTCGTA
Found at i:4178 original size:333 final size:331
Alignment explanation
Indices: 3561--4387 Score: 1266
Period size: 333 Copynumber: 2.5 Consensus size: 331
3551 TATGCTCGTA
* * * **
3561 AAAAAGTTTTCCTCAATTTTTTGACACAATAGTCGTAAAAAGTATATAATTCAATGACATAAAA-
1 AAAAATTTTTCCTCAATTTTTTGACACAATAGTTGTAAAAAGTATATAATTCGATTCCA-AAAAG
* * * *
3625 ATTAAAAGGCTTTTCGCGCTTCTAATATTGTTTTTCCTATTTTTTTGAATTAATTTCTAATAAAA
65 ATTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTATTTTTTTGTATTAATTTCTAAT-AAA
* *
3690 AACGAAACAAGATTCTGATGCTCGTAAAAAAGAAATCCTTAAATCCATTGTGATTGAGATTTGGT
129 AACGAAACAAGATTCTGATGCTCGTAAAAAAGAAATCCTCAAATCCATTGTGACTGAGATTTGGT
*
3755 TATATGAATATATATATTTCAACGAGTCTTGGCGCCAAAAATTATGCAAAACTGTGTCTGGGCCC
194 TATATGAATATATATATTTCAACGAGTCTTGACGCCAAAAATTATGCAAAACTGTGTCTGGGCCC
** *
3820 GGAACGTGTTTTTAGCCAAAAACTGTG-TTTTTAGCCACACGATTTCGGTTAAAATTTTGCAAAA
259 GGAACGTGTTTTTAGCCAAAAACTGTGATGGTTAG-CACACGATTTCGGCTAAAATTTTGCAAAA
*
3884 ACTGAGCCAG
323 ACTAAGCC-G
*
3894 AAAAATTTTTCCTTC-ATTTTTTGACAGAATAGTTGTAAAAAGCTATATAATTCGATTCCAAAAA
1 AAAAATTTTTCC-TCAATTTTTTGACACAATAGTTGTAAAAAG-TATATAATTCGATTCCAAAAA
3958 GATTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTATTTTTTTGTATTAATTTCTAATAAA
64 GATTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTATTTTTTTGTATTAATTTCTAATAAA
* * *
4023 AACGAAATAGGATTCTGATGCTCGTAAAAAATAAATCCTCAAATCCATTGTGACTGAGATTTGGT
129 AACGAAACAAGATTCTGATGCTCGTAAAAAAGAAATCCTCAAATCCATTGTGACTGAGATTTGGT
*
4088 TATATGAATATATATATTTCAACGAGTCTTGACGCCAAAAATTATGCAAAATTGTG-CATGGGCC
194 TATATGAATATATATATTTCAACGAGTCTTGACGCCAAAAATTATGCAAAACTGTGTC-TGGGCC
* *
4152 CGGAACGTGTTTTTAGCTAGAAACTGTGATGGTTAGCACACGATTTCGGCTAAAATTTTGCAAAA
258 CGGAACGTGTTTTTAGCCAAAAACTGTGATGGTTAGCACACGATTTCGGCTAAAATTTTGCAAAA
4217 ACTAAGCCG
323 ACTAAGCCG
*
4226 AAAACATTTTTCCTCAATTTTTTGACACAATAGTTGTAAAAATTATATAATTCGATTCCAAAAAG
1 AAAA-ATTTTTCCTCAATTTTTTGACACAATAGTTGTAAAAAGTATATAATTCGATTCCAAAAAG
* * *
4291 ATTAAAAGTCTTTTCACGCTTTTAACAACGTTTTTCCTATTTTTTTTGGTATTAATTTCTAATAG
65 ATTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTA-TTTTTTT-GTATTAATTTCTAATA-
* *
4356 AAATCGAAACAAGATTCTGATCCTCGTAAAAA
127 AAAACGAAACAAGATTCTGATGCTCGTAAAAA
4388 CAAGTCTATA
Statistics
Matches: 452, Mismatches: 32, Indels: 18
0.90 0.06 0.04
Matches are distributed among these distances:
332 66 0.15
333 264 0.58
334 94 0.21
335 28 0.06
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (331 bp):
AAAAATTTTTCCTCAATTTTTTGACACAATAGTTGTAAAAAGTATATAATTCGATTCCAAAAAGA
TTAAAAGGCTTTTCACGCTTTTAATAATGTTTTTCCTATTTTTTTGTATTAATTTCTAATAAAAA
CGAAACAAGATTCTGATGCTCGTAAAAAAGAAATCCTCAAATCCATTGTGACTGAGATTTGGTTA
TATGAATATATATATTTCAACGAGTCTTGACGCCAAAAATTATGCAAAACTGTGTCTGGGCCCGG
AACGTGTTTTTAGCCAAAAACTGTGATGGTTAGCACACGATTTCGGCTAAAATTTTGCAAAAACT
AAGCCG
Done.