Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014642.1 Corchorus olitorius cultivar O-4 contig14675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124724

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1259--1576
156
2.0
159
90
6
511
41
15
15
27
1.86
8291--8500
117
1.8
116
89
3
332
35
28
7
29
1.84
19422--19591
84
2.0
84
91
2
279
32
27
19
20
1.97
21077--21181
52
2.0
52
100
0
210
20
22
13
42
1.87
21081--21164
28
3.1
28
61
19
70
20
21
13
45
1.84
28785--28809
12
2.1
12
100
0
50
60
0
0
40
0.97
29466--29606
76
1.9
76
87
0
210
31
17
16
34
1.92
30659--30683
6
4.2
6
100
0
50
52
0
0
48
1.00
38038--38613
190
3.0
189
90
3
893
35
16
13
34
1.88
56724--56754
15
2.1
15
100
0
62
61
12
6
19
1.53
56782--56816
14
2.5
14
90
0
61
68
0
8
22
1.16
57256--57286
15
2.1
15
100
0
62
61
12
6
19
1.53
57310--57345
13
2.7
13
86
4
54
69
0
8
22
1.15
56513--57574
529
2.0
535
98
1
2055
48
9
9
32
1.68
57667--57698
15
2.1
16
94
5
57
62
12
6
18
1.50
57728--57762
14
2.5
14
90
0
61
68
0
8
22
1.16
57223--58049
417
2.0
409
97
1
1555
49
5
10
33
1.61
58054--58113
28
2.2
28
84
3
77
58
8
6
26
1.52
61445--61483
13
3.0
13
85
7
53
51
23
10
15
1.73
61434--61479
13
3.3
13
82
11
56
43
28
10
17
1.82
66509--66562
18
3.0
18
77
0
63
16
12
51
18
1.75
67162--67196
3
11.7
3
100
0
70
0
0
65
34
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85668--85694
2
13.5
2
100
0
54
51
0
0
48
1.00
94656--95011
197
1.8
197
97
0
676
27
19
18
34
1.95
116346--116536
102
1.9
101
95
1
346
34
12
19
33
1.89
118940--118973
17
2.0
17
100
0
68
47
5
5
41
1.52
119115--119157
19
2.3
18
80
11
50
62
0
2
34
1.08
121945--121983
2
19.0
2
86
5
51
51
0
5
43
1.24
121928--121982
21
2.7
21
97
2
103
52
0
7
40
1.29
122740--123041
155
2.0
153
90
2
480
50
2
8
38
1.48
124432--124472
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!