Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014647.1 Corchorus olitorius cultivar O-4 contig14680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 155469
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Found at i:3199 original size:1 final size:1
Alignment explanation
Indices: 3193--3222 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
3183 ACAACAACAC
3193 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
3223 GAGGAAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:3387 original size:39 final size:39
Alignment explanation
Indices: 3333--3411 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
3323 ACAGAAATAA
3333 GCCCAATTCTATTAGAAAAGGAAGGCCCAAATCCAATGC
1 GCCCAATTCTATTAGAAAAGGAAGGCCCAAATCCAATGC
3372 GCCCAATTCTATTAGAAAAGGAAGGCCCAAATCCAATGC
1 GCCCAATTCTATTAGAAAAGGAAGGCCCAAATCCAATGC
3411 G
1 G
3412 ATGAAAATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.18
Consensus pattern (39 bp):
GCCCAATTCTATTAGAAAAGGAAGGCCCAAATCCAATGC
Found at i:3841 original size:22 final size:23
Alignment explanation
Indices: 3810--3853 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
3800 CGAACTCAGG
3810 TTTTTCTTCTTTTCTT-CTTCAT
1 TTTTTCTTCTTTTCTTCCTTCAT
* *
3832 TTTTTTTTCTTTTTTTCCTTCA
1 TTTTTCTTCTTTTCTTCCTTCA
3854 AGAAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTCTTCTTTTCTTCCTTCAT
Found at i:3847 original size:11 final size:11
Alignment explanation
Indices: 3810--3848 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
3800 CGAACTCAGG
3810 TTTTTCTTCTT
1 TTTTTCTTCTT
*
3821 TTCTTCTTCATT
1 TTTTTCTTC-TT
3833 TTTTT-TTCTT
1 TTTTTCTTCTT
3843 TTTTTC
1 TTTTTC
3849 CTTCAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.29
11 11 0.46
12 6 0.25
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:16854 original size:18 final size:18
Alignment explanation
Indices: 16831--16873 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
16821 ACCAGTGTAA
16831 GGAGCATACAAGAAAAGG
1 GGAGCATACAAGAAAAGG
16849 GGAGCATACAAGAAAAGG
1 GGAGCATACAAGAAAAGG
16867 GGAGCAT
1 GGAGCAT
16874 GGAGGGGCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.35, T:0.07
Consensus pattern (18 bp):
GGAGCATACAAGAAAAGG
Found at i:27031 original size:13 final size:13
Alignment explanation
Indices: 27013--27038 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27003 AATACTTGAA
27013 ACATTATAAAATT
1 ACATTATAAAATT
27026 ACATTATAAAATT
1 ACATTATAAAATT
27039 TGGGAGATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (13 bp):
ACATTATAAAATT
Found at i:30993 original size:59 final size:59
Alignment explanation
Indices: 30922--31037 Score: 223
Period size: 59 Copynumber: 2.0 Consensus size: 59
30912 TAGCTGCTAC
30922 TGCTTTGGAAGAACTTAGACCAAATGAATTCCTTGTTTTACTTGTTGATAGATATATCA
1 TGCTTTGGAAGAACTTAGACCAAATGAATTCCTTGTTTTACTTGTTGATAGATATATCA
*
30981 TGCTTTGGAAGAACTTAGACTAAATGAATTCCTTGTTTTACTTGTTGATAGATATAT
1 TGCTTTGGAAGAACTTAGACCAAATGAATTCCTTGTTTTACTTGTTGATAGATATAT
31038 TATATGTAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (59 bp):
TGCTTTGGAAGAACTTAGACCAAATGAATTCCTTGTTTTACTTGTTGATAGATATATCA
Found at i:42312 original size:31 final size:28
Alignment explanation
Indices: 42277--42354 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 28
42267 ATTTATAGCA
42277 TTTGGACGTTTTGCCCCTGAACAATTCAATT
1 TTTGGACGTTTTGCCCCTGAAC---TCAATT
** *
42308 TTTGGATATTTTGCCCTTTGAACTCAATT
1 TTTGGACGTTTTGCCC-CTGAACTCAATT
42337 TTTGGACGTTTTGCCCCT
1 TTTGGACGTTTTGCCCCT
42355 CAGACTAACG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
28 1 0.03
29 20 0.50
31 14 0.35
32 5 0.12
ACGTcount: A:0.18, C:0.22, G:0.17, T:0.44
Consensus pattern (28 bp):
TTTGGACGTTTTGCCCCTGAACTCAATT
Found at i:42481 original size:32 final size:32
Alignment explanation
Indices: 42414--42491 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
42404 AAAAATGCCT
*
42414 CGTGGCATTGCCACGTCAGACCAACCAGCTCA
1 CGTGGCATTGCCACGTCAGACAAACCAGCTCA
*
42446 CGTGGCATTGCCACGT-AGGACAAAACC-GCTGA
1 CGTGGCATTGCCACGTCA-GAC-AAACCAGCTCA
* *
42478 CGTGTCAATGCCAC
1 CGTGGCATTGCCAC
42492 ATGGCATTGC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
31 1 0.03
32 35 0.88
33 4 0.10
ACGTcount: A:0.26, C:0.33, G:0.24, T:0.17
Consensus pattern (32 bp):
CGTGGCATTGCCACGTCAGACAAACCAGCTCA
Found at i:44731 original size:21 final size:22
Alignment explanation
Indices: 44689--44746 Score: 82
Period size: 21 Copynumber: 2.7 Consensus size: 22
44679 TTAATAACTG
44689 TACAAATGAGATTATAGTACTA
1 TACAAATGAGATTATAGTACTA
* *
44711 TACAAATTAGATTA-GGTACTA
1 TACAAATGAGATTATAGTACTA
*
44732 TACAGATGAGATTAT
1 TACAAATGAGATTAT
44747 TAGAGCAGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 18 0.58
22 13 0.42
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.33
Consensus pattern (22 bp):
TACAAATGAGATTATAGTACTA
Found at i:45591 original size:34 final size:34
Alignment explanation
Indices: 45553--45620 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
45543 AAGTATCAAG
45553 AAGTAAATTGGAATATATTGATATATATAGTTTT
1 AAGTAAATTGGAATATATTGATATATATAGTTTT
45587 AAGTAAATTGGAATATATTGATATATATAGTTTT
1 AAGTAAATTGGAATATATTGATATATATAGTTTT
45621 TTTTATGTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (34 bp):
AAGTAAATTGGAATATATTGATATATATAGTTTT
Found at i:46268 original size:3 final size:3
Alignment explanation
Indices: 46260--46292 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
46250 TTAAACTCAA
*
46260 AAT AAT AAT AAT AAT AAT AAT -AT AAT GAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
46293 TCTATCCTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:49268 original size:19 final size:19
Alignment explanation
Indices: 49241--49277 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
49231 TTTGGACCCA
49241 AAACAGTAGGGAAACAGTC
1 AAACAGTAGGGAAACAGTC
* *
49260 AAACGGTAGTGAAACAGT
1 AAACAGTAGGGAAACAGT
49278 TACAGATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.27, T:0.14
Consensus pattern (19 bp):
AAACAGTAGGGAAACAGTC
Found at i:57465 original size:54 final size:54
Alignment explanation
Indices: 57402--57511 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
57392 AGTCCCTAGA
*
57402 GGACACATGTCACCCTTGAGAACCCGTTTGTGTAGTGTGCTAAACTCCACCGCC
1 GGACACATGTCACCCTTGAGAACCCGTTTGTGTAGTCTGCTAAACTCCACCGCC
*
57456 GGACACATGTCATCCTTGAGAACCCGTTTGTGTAGTCTGCTAAACTCCACCGCC
1 GGACACATGTCACCCTTGAGAACCCGTTTGTGTAGTCTGCTAAACTCCACCGCC
57510 GG
1 GG
57512 TGTATTGTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.22, C:0.31, G:0.23, T:0.25
Consensus pattern (54 bp):
GGACACATGTCACCCTTGAGAACCCGTTTGTGTAGTCTGCTAAACTCCACCGCC
Found at i:57581 original size:48 final size:48
Alignment explanation
Indices: 57510--57605 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
57500 CTCCACCGCC
57510 GGTGTATTGTATAATTTGCCATATAACATATACATATGTATACAAACT
1 GGTGTATTGTATAATTTGCCATATAACATATACATATGTATACAAACT
57558 GGTGTATTGTATAATTTGCCATATAACATATACATATGTATACAAACT
1 GGTGTATTGTATAATTTGCCATATAACATATACATATGTATACAAACT
57606 TACTCTTGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (48 bp):
GGTGTATTGTATAATTTGCCATATAACATATACATATGTATACAAACT
Found at i:57676 original size:33 final size:33
Alignment explanation
Indices: 57630--57695 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
57620 CCAATAGAAC
57630 ACAGGGAGCAGGAGGAAGAGAGTTTCGATAATA
1 ACAGGGAGCAGGAGGAAGAGAGTTTCGATAATA
*
57663 ACAGGGAGGAGGAGGAAGAGAGTTTCGATAATA
1 ACAGGGAGCAGGAGGAAGAGAGTTTCGATAATA
57696 TTTCTAGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.08, G:0.38, T:0.15
Consensus pattern (33 bp):
ACAGGGAGCAGGAGGAAGAGAGTTTCGATAATA
Found at i:57846 original size:31 final size:31
Alignment explanation
Indices: 57808--57870 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
57798 CTAATCTATG
57808 AGCCAACAAACCCCTATCGTCTAAGCCAACA
1 AGCCAACAAACCCCTATCGTCTAAGCCAACA
*
57839 AGCCAACAAACCCCTATCGTCTAGGCCAACA
1 AGCCAACAAACCCCTATCGTCTAAGCCAACA
57870 A
1 A
57871 ACCCATATCG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.38, G:0.11, T:0.13
Consensus pattern (31 bp):
AGCCAACAAACCCCTATCGTCTAAGCCAACA
Found at i:57870 original size:23 final size:23
Alignment explanation
Indices: 57840--57888 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
57830 AAGCCAACAA
*
57840 GCCAACAAACCCCTATCGTCTAG
1 GCCAACAAACCCATATCGTCTAG
57863 GCCAACAAACCCATATCGTCTAG
1 GCCAACAAACCCATATCGTCTAG
57886 GCC
1 GCC
57889 CAAACATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.31, C:0.39, G:0.14, T:0.16
Consensus pattern (23 bp):
GCCAACAAACCCATATCGTCTAG
Found at i:84780 original size:7 final size:7
Alignment explanation
Indices: 84770--84795 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
84760 GCTGAGCACT
84770 GAGCAGA
1 GAGCAGA
84777 GAGCAGA
1 GAGCAGA
84784 GAGCAGA
1 GAGCAGA
84791 GAGCA
1 GAGCA
84796 CAAAGCTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.15, G:0.42, T:0.00
Consensus pattern (7 bp):
GAGCAGA
Found at i:101958 original size:150 final size:150
Alignment explanation
Indices: 101687--101981 Score: 563
Period size: 150 Copynumber: 2.0 Consensus size: 150
101677 CAGGGCAAAT
101687 GGTTGCACAAAACATCAATGAGGAGGAGAATTTAAGAATCTTAGCAATTGCACTTTTTTATTTGT
1 GGTTGCACAAAACATCAATGAGGAGGAGAATTTAAGAATCTTAGCAATTGCACTTTTTTATTTGT
101752 TTATAAGTCAACAAAAAAGGACATTATACAATTAGCATCTAGAAGACCAAATTTCCATTGTCTTT
66 TTATAAGTCAACAAAAAAGGACATTATACAATTAGCATCTAGAAGACCAAATTTCCATTGTCTTT
101817 CACCATTCATTGAATGAGGA
131 CACCATTCATTGAATGAGGA
101837 GGTTGCACAAAACATCAATGAGGAGGAGAATTTAAGAATCTTAGCAATTGCACTTTTTTATTTGT
1 GGTTGCACAAAACATCAATGAGGAGGAGAATTTAAGAATCTTAGCAATTGCACTTTTTTATTTGT
* *
101902 TTCTAAGTTAACAAAAAAGGACATTATACAATTAGCATCTAGAAGACCAAATTTCCATTGTCTTT
66 TTATAAGTCAACAAAAAAGGACATTATACAATTAGCATCTAGAAGACCAAATTTCCATTGTCTTT
*
101967 CACCATTTATTGAAT
131 CACCATTCATTGAAT
101982 CAAAATTTTA
Statistics
Matches: 142, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 142 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (150 bp):
GGTTGCACAAAACATCAATGAGGAGGAGAATTTAAGAATCTTAGCAATTGCACTTTTTTATTTGT
TTATAAGTCAACAAAAAAGGACATTATACAATTAGCATCTAGAAGACCAAATTTCCATTGTCTTT
CACCATTCATTGAATGAGGA
Found at i:106365 original size:19 final size:19
Alignment explanation
Indices: 106341--106377 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
106331 CTGTTTAGCA
106341 ACTGTACAAATGAGATTAC
1 ACTGTACAAATGAGATTAC
* *
106360 ACTGTACAGATTAGATTA
1 ACTGTACAAATGAGATTA
106378 GGTACTGTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
ACTGTACAAATGAGATTAC
Found at i:113173 original size:176 final size:176
Alignment explanation
Indices: 112879--113230 Score: 686
Period size: 176 Copynumber: 2.0 Consensus size: 176
112869 ATTGCCAGCA
*
112879 GGTCTATTCAGGTTACAAGCATGCAGAATGCATTCCCATAGCTTCCTCGAGTAGTCACAAGAAAA
1 GGTCTATTCAGGTTACAAGCATGCAGAATGCATTCCCATAGCTTCCTCGAGTAGGCACAAGAAAA
112944 GAATAAATGATCTCGGGTTTCAAAGCACAAACCACATAAGATACAATCAGGGGAATCAATATGAA
66 GAATAAATGATCTCGGGTTTCAAAGCACAAACCACATAAGATACAATCAGGGGAATCAATATGAA
113009 CATGCCATTTTAACAATCTGCTTTTAGTTGGTAACCTATCAAGGAT
131 CATGCCATTTTAACAATCTGCTTTTAGTTGGTAACCTATCAAGGAT
113055 GGTCTATTCAGGTTACAAGCATGCAGAATGCATTCCCATAGCTTCCTCGAGTAGGCACAAGAAAA
1 GGTCTATTCAGGTTACAAGCATGCAGAATGCATTCCCATAGCTTCCTCGAGTAGGCACAAGAAAA
113120 GAATAAATGATCTCGGGTTTCAAAGCACAAACCACATAAGATACAATCAGGGGAATCAATATGAA
66 GAATAAATGATCTCGGGTTTCAAAGCACAAACCACATAAGATACAATCAGGGGAATCAATATGAA
*
113185 CATGCCATTTTAACAATCTGCTTTTAGTTGGTACCCTATCAAGGAT
131 CATGCCATTTTAACAATCTGCTTTTAGTTGGTAACCTATCAAGGAT
113231 AGCCATCCAA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
176 174 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (176 bp):
GGTCTATTCAGGTTACAAGCATGCAGAATGCATTCCCATAGCTTCCTCGAGTAGGCACAAGAAAA
GAATAAATGATCTCGGGTTTCAAAGCACAAACCACATAAGATACAATCAGGGGAATCAATATGAA
CATGCCATTTTAACAATCTGCTTTTAGTTGGTAACCTATCAAGGAT
Found at i:121256 original size:16 final size:16
Alignment explanation
Indices: 121235--121267 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
121225 TACTATATTA
121235 TTTTCCTTATATTCAG
1 TTTTCCTTATATTCAG
121251 TTTTCCTTATATTCAG
1 TTTTCCTTATATTCAG
121267 T
1 T
121268 GGCGGAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.58
Consensus pattern (16 bp):
TTTTCCTTATATTCAG
Found at i:130537 original size:44 final size:44
Alignment explanation
Indices: 130474--130569 Score: 183
Period size: 44 Copynumber: 2.2 Consensus size: 44
130464 ATATAGGTGA
130474 GGCCTTGGGCCTTTAGTTGGTTTTTGGGCTTTAAGTGATAAGTG
1 GGCCTTGGGCCTTTAGTTGGTTTTTGGGCTTTAAGTGATAAGTG
*
130518 GGCCTTGGGCCTTTAGTTGGTTTTTGGGCTTTAAGTGGTAAGTG
1 GGCCTTGGGCCTTTAGTTGGTTTTTGGGCTTTAAGTGATAAGTG
130562 GGCCTTGG
1 GGCCTTGG
130570 ACCTAGTTTT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.11, C:0.12, G:0.36, T:0.40
Consensus pattern (44 bp):
GGCCTTGGGCCTTTAGTTGGTTTTTGGGCTTTAAGTGATAAGTG
Found at i:145046 original size:84 final size:84
Alignment explanation
Indices: 144905--145073 Score: 329
Period size: 84 Copynumber: 2.0 Consensus size: 84
144895 TTTCTTGGGG
144905 TTATATTGATGATCCGATCCAGATTAATTAGCTATGCTTAAATTTATGATAACTGAGGTTGGAGC
1 TTATATTGATGATCCGATCCAGATTAATTAGCTATGCTTAAATTTATGATAACTGAGGTTGGAGC
144970 ATCTCAAAACCAAAAGCAC
66 ATCTCAAAACCAAAAGCAC
*
144989 TTATATTGATGATCCGATCCAGATTAATTAGCTATGCTTAAATTTATGATAACTGAGGTTTGAGC
1 TTATATTGATGATCCGATCCAGATTAATTAGCTATGCTTAAATTTATGATAACTGAGGTTGGAGC
145054 ATCTCAAAACCAAAAGCAC
66 ATCTCAAAACCAAAAGCAC
145073 T
1 T
145074 AATCATCATT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 84 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (84 bp):
TTATATTGATGATCCGATCCAGATTAATTAGCTATGCTTAAATTTATGATAACTGAGGTTGGAGC
ATCTCAAAACCAAAAGCAC
Done.