Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014649.1 Corchorus olitorius cultivar O-4 contig14682, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16722
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31


Found at i:9446 original size:3 final size:3

Alignment explanation


    Indices: 9438--9465  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       9428 TGTTTTCCTG

                                                 
       9438 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C

       9466 CTCTGTATTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64


Consensus pattern (3 bp):   
CTT

Found at i:13562 original size:18 final size:18

Alignment explanation


    Indices: 13541--13582  Score: 59
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      13531 TTCATCATTT

                               
      13541 TCATCTATGTCA-TCAAAC
          1 TCATCTATGT-ATTCAAAC

                  *           
      13559 TCATCTTTGTATTCAAAC
          1 TCATCTATGTATTCAAAC

                  
      13577 TCATCT
          1 TCATCT

      13583 TGTTCAGTGT


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17    1  0.05
  18   21  0.95

ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40


Consensus pattern (18 bp):   
TCATCTATGTATTCAAAC
Done.