Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014650.1 Corchorus olitorius cultivar O-4 contig14683, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20751
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:560 original size:16 final size:16

Alignment explanation


    Indices: 539--571  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        529 ATTGAGTCCT

                            
        539 TCTGTCTAAGGCCCCA
          1 TCTGTCTAAGGCCCCA

                            
        555 TCTGTCTAAGGCCCCA
          1 TCTGTCTAAGGCCCCA

             
        571 T
          1 T

        572 TAAATTCGCT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.18, C:0.36, G:0.18, T:0.27


Consensus pattern (16 bp):   
TCTGTCTAAGGCCCCA
Done.