Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014652.1 Corchorus olitorius cultivar O-4 contig14685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4377
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:3687 original size:70 final size:71

Alignment explanation


    Indices: 3604--3745  Score: 259
    Period size: 70  Copynumber: 2.0  Consensus size: 71

       3594 AGAAATCCTA

                                           *                                 
       3604 TTCCTTTTTAGGAATTCAACTCCAATTCAAAGTAGGAATACTTTATTTGTAAGAATATATGGCCA
          1 TTCCTTTTTAGGAATTCAACTCCAATTCAAAATAGGAATACTTTATTTGTAAGAATATATGGCCA

                  
       3669 TTAAAT
         66 TTAAAT

                                                                          *  
       3675 TTCC-TTTTAGGAATTCAACTCCAATTCAAAATAGGAATACTTTATTTGTAAGAATATATGGTCA
          1 TTCCTTTTTAGGAATTCAACTCCAATTCAAAATAGGAATACTTTATTTGTAAGAATATATGGCCA

                  
       3739 TTAAAT
         66 TTAAAT

             
       3745 T
          1 T

       3746 AAATTGTCGG


Statistics
Matches: 69,  Mismatches: 2, Indels: 1
        0.96            0.03        0.01

Matches are distributed among these distances:
  70   65  0.94
  71    4  0.06

ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39


Consensus pattern (71 bp):   
TTCCTTTTTAGGAATTCAACTCCAATTCAAAATAGGAATACTTTATTTGTAAGAATATATGGCCA
TTAAAT
Done.