Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014655.1 Corchorus olitorius cultivar O-4 contig14688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34


Found at i:771 original size:28 final size:31

Alignment explanation


    Indices: 739--799  Score: 92
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        729 TCCAAACTAT

                             *             
        739 AATTAAT-TTAT-TA-TTATAATACACAAAA
          1 AATTAATGTTATATACTAATAATACACAAAA

                                           
        767 AATTAATGTTATATACTAATAATACACAAAA
          1 AATTAATGTTATATACTAATAATACACAAAA

              
        798 AA
          1 AA

        800 ATAAATATTG


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  28    7  0.24
  29    4  0.14
  30    2  0.07
  31   16  0.55

ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34


Consensus pattern (31 bp):   
AATTAATGTTATATACTAATAATACACAAAA

Done.