Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014656.1 Corchorus olitorius cultivar O-4 contig14689, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 69649
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Found at i:341 original size:20 final size:21
Alignment explanation
Indices: 313--358 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
303 TTTTTTGGGT
313 TTGAATGTTCATCAT-TGTTC
1 TTGAATGTTCATCATGTGTTC
* * *
333 TTGATTGTTCTTGATGTGTTC
1 TTGAATGTTCATCATGTGTTC
354 TTGAA
1 TTGAA
359 AAAGTTGGGC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.52
Consensus pattern (21 bp):
TTGAATGTTCATCATGTGTTC
Found at i:354 original size:11 final size:10
Alignment explanation
Indices: 326--357 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
316 AATGTTCATC
326 ATTGTTCTTG
1 ATTGTTCTTG
336 ATTGTTCTTG
1 ATTGTTCTTG
346 ATGTGTTCTTG
1 AT-TGTTCTTG
357 A
1 A
358 AAAAGTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.12, C:0.09, G:0.22, T:0.56
Consensus pattern (10 bp):
ATTGTTCTTG
Found at i:1627 original size:332 final size:332
Alignment explanation
Indices: 1020--3032 Score: 3127
Period size: 332 Copynumber: 6.1 Consensus size: 332
1010 GATTTTAGCC
* * * *
1020 ATGGTTAGTACATGATTTCAGCTAAAATTTTGTAAAAACTGGCCCGACAAATTTTTTTATCAATT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAA-TTTTTTCTCAATT
* *
1085 TTTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGCTTTTCTCGC
65 TTTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGC
1150 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
130 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
* *
1215 TCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGAATTGTTTAGAAGAATATCGATATTGC
195 TCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGC
* *
1280 AATGAGTCTGGGGACCAAAAATCATGCGAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
260 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
*
1345 AAATCGTG
325 AAACCGTG
* * * * *
1353 ATGGTTAGTACATGAATTCGGCTAAAATTCTACGAAAACTAACCCGACAAATTTTTTCTCAATTT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTCTCAATTT
* * * *
1418 TTGGCCACAATACTCATAGAAAA-TATGTAATTCAACGACAAAACGATTGAAGGGATTTTCACGC
66 TTAGCCACAATACTCAT-GAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGC
1482 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
130 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
* *
1547 TCTCGTAAAAACAAATCCATAAATCCAATTTGGCTGAGATTTGTTTAGAAGTATATAGATATTGC
195 TCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGC
*
1612 AATGAGTCTGGGGACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
260 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
1677 AAACCGTG
325 AAACCGTG
* * * * *
1685 ATGATTAGTACATGAATTCGGCTAAAATTCTGCGAAAACTGACCCGGCAAATTTTTTCTCAATTT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTCTCAATTT
* * * * *
1750 TTGGCCACAATACTCATAGAAAA-TATATAATTCATCGCCAAAATGATTGAAAGGCTTTTCTCGC
66 TTAGCCACAATACTCAT-GAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGC
* *
1814 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATATAATTAAATGGAAATCTGATTTTGAT
130 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
* * *
1879 TCTGGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTATTTAGAAGAATATAGATATTGT
195 TCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGC
* * * *
1944 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGACGGGACCCCGGAACGCGCTTTTAGCCTA
260 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
2009 AAACCGTG
325 AAACCGTG
* * * *
2017 ATGGTTAGTTCATGATTTCGGCTAAAATTTTGCAAAAACTGGCCCGACAAACTTTATCTCAATTT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTCTCAATTT
* * *
2082 TTTGCCATAATACTCATGAAAATTATATAATTCAACGCCAAAATGATGGAAGGGATTTTCACGCT
66 TTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGCT
* *
2147 TCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGATATCGAATTTTGATT
131 TCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGATT
* * * *
2212 CTCGTAAAAAGAAA-CTTATAAATCCAATGTGGCTAAGATTTGTTTAGAAGATTATAGATATTGC
196 CTCGTAAAAACAAATC-CATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGC
*
2276 AATGAGTCTGGGCACCAAAAATCTTGCAAAATAGAG-CTGGGGCCCCGGAACGCGTTTTTAGCCA
260 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTC-GGGGCCCCGGAACGCGTTTTTAGCCA
2340 AAAACCGTG
324 AAAACCGTG
* *
2349 ATGGTTAGTACATGATTTCAGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTATCAATTT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTCTCAATTT
* *
2414 TTAGCCACAGTACTCATGAAAATTATATAATTCAATGCCAAAATGATTGAAGGGATTTTCACGCT
66 TTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGCT
* *
2479 TCTAATATCGTTTTTTCTATTTTTTCCGAATTAATATCTAATTAAATGGATATCGGATTTTGATT
131 TCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGATT
* * *
2544 CTCGTAAAAACAAATCTATAAATCCAATGTGGCTAAGATTTGTTTAGAAGAGTATAGATATTGCA
196 CTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGCA
* * * *
2609 ATGAGTCTGGGCACCAAAATTCTTGCAAAATAGAGTCGGGTCCCCGGAACGTGTTTTTAGCCAAA
261 ATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAA
*
2674 AACCGTA
326 AACCGTG
*
2681 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTTACCCGACAAATTTTTTTCTCAATT
1 ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAA-TTTTTTCTCAATT
* **
2746 TTTTGCCACAATACTCATGAAAATTATATAATTCAACAACAAAATGATTGAAGGGATTTTCACGC
65 TTTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGC
* *
2811 TTCTAATATCGTTTTTTCTATTTTTTCCGAATTAATATCTAATTAAATGGATATCGGATTTTGAT
130 TTCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGAT
* * *
2876 TCTCGTAAAAACAGATCTATAAATCCAATGTGACT-AGATTTGTTTAGAAGAATATAGATATTGC
195 TCTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGC
* * * * * * * *
2940 AATGAGTCTGGGCGCCAAAAATTATGGAAAACAGAGTCGGAGCCCCGGAATGTGTTTTTAGCTAA
260 AATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAA
*
3005 AAACTGTG
325 AAACCGTG
**
3013 ATGGTTAGTACGCGATTTCG
1 ATGGTTAGTACATGATTTCG
3033 ACTTGCAAAA
Statistics
Matches: 1554, Mismatches: 119, Indels: 15
0.92 0.07 0.01
Matches are distributed among these distances:
331 7 0.00
332 1327 0.85
333 220 0.14
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (332 bp):
ATGGTTAGTACATGATTTCGGCTAAAATTTTGCAAAAACTGACCCGACAAATTTTTTCTCAATTT
TTAGCCACAATACTCATGAAAATTATATAATTCAACGCCAAAATGATTGAAGGGATTTTCACGCT
TCTAATATCGTTTTTCCTATTTTTTCCGAATTAATATCTAATTAAATGGAAATCGGATTTTGATT
CTCGTAAAAACAAATCCATAAATCCAATGTGGCTGAGATTTGTTTAGAAGAATATAGATATTGCA
ATGAGTCTGGGCACCAAAAATCATGCAAAATAGAGTCGGGGCCCCGGAACGCGTTTTTAGCCAAA
AACCGTG
Found at i:16210 original size:12 final size:12
Alignment explanation
Indices: 16193--16224 Score: 57
Period size: 11 Copynumber: 2.8 Consensus size: 12
16183 TCTCAGCATA
16193 TTCTTTTTTCTT
1 TTCTTTTTTCTT
16205 TTC-TTTTTCTT
1 TTCTTTTTTCTT
16216 TTCTTTTTT
1 TTCTTTTTT
16225 TTTGGCGAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.58
12 8 0.42
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (12 bp):
TTCTTTTTTCTT
Found at i:16219 original size:16 final size:15
Alignment explanation
Indices: 16198--16227 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
16188 GCATATTCTT
16198 TTTTCTTTTCTTTTTC
1 TTTTCTTTT-TTTTTC
16214 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
16228 GGCGAGAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTCTTTTTTTTTC
Found at i:22128 original size:6 final size:6
Alignment explanation
Indices: 22043--22113 Score: 124
Period size: 6 Copynumber: 11.8 Consensus size: 6
22033 CTCATTGTCT
22043 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA
* *
22091 TCTTCA TCTTCT TCTTCT TCTTC
1 TCTTCA TCTTCA TCTTCA TCTTC
22114 TTCATCGTCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 64 1.00
ACGTcount: A:0.13, C:0.34, G:0.00, T:0.54
Consensus pattern (6 bp):
TCTTCA
Found at i:22164 original size:18 final size:18
Alignment explanation
Indices: 22127--22164 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
22117 ATCGTCTTCG
*
22127 TCGTCGTCGTCTTCAACT
1 TCGTCGTCGTCGTCAACT
*
22145 TCGTCGTCGTCGTCAGCT
1 TCGTCGTCGTCGTCAACT
22163 TC
1 TC
22165 AAGCTCAGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.34, G:0.21, T:0.37
Consensus pattern (18 bp):
TCGTCGTCGTCGTCAACT
Found at i:25497 original size:41 final size:41
Alignment explanation
Indices: 25436--25534 Score: 180
Period size: 41 Copynumber: 2.4 Consensus size: 41
25426 ATCGAGTAAT
*
25436 TGAAAAGAAGTTTTGGTTTTTTTGGGATATTTTTCCTTGCA
1 TGAAAAGAAGTTTTGTTTTTTTTGGGATATTTTTCCTTGCA
25477 TGAAAAGAAGTTTTGTTTTTTTTGGGATATTTTTCCTTGCA
1 TGAAAAGAAGTTTTGTTTTTTTTGGGATATTTTTCCTTGCA
*
25518 TAAAAAGAAGTTTTGTT
1 TGAAAAGAAGTTTTGTT
25535 AGTTTATGCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.25, C:0.06, G:0.20, T:0.48
Consensus pattern (41 bp):
TGAAAAGAAGTTTTGTTTTTTTTGGGATATTTTTCCTTGCA
Found at i:26816 original size:5 final size:5
Alignment explanation
Indices: 26808--26840 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
26798 TTTTCCTCAC
26808 AATTT AATTT AATTT AATTT AATTT AATTT AAT
1 AATTT AATTT AATTT AATTT AATTT AATTT AAT
26841 CTACTATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:27350 original size:29 final size:30
Alignment explanation
Indices: 27280--27355 Score: 102
Period size: 29 Copynumber: 2.6 Consensus size: 30
27270 ATACCGTATA
**
27280 GGTCCCTCTACTTACAAAAGGGATCAATTT
1 GGTCCCTCTACTTACAAAAACGATCAATTT
*
27310 GGTCCC-CATAC-TACAAAAACTATCAATTT
1 GGTCCCTC-TACTTACAAAAACGATCAATTT
27339 GGTCCCTCTACTTACAA
1 GGTCCCTCTACTTACAA
27356 TTTGGTGTCA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 25 0.62
30 15 0.38
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.29
Consensus pattern (30 bp):
GGTCCCTCTACTTACAAAAACGATCAATTT
Found at i:29976 original size:19 final size:19
Alignment explanation
Indices: 29929--29976 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
29919 ATATCCCTAA
* *
29929 GAATAAACAATCAAGAATT
1 GAATAAACAAACAAGAATG
** *
29948 GAATCCACAAACATGAATG
1 GAATAAACAAACAAGAATG
29967 GAATAAACAA
1 GAATAAACAA
29977 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.56, C:0.15, G:0.12, T:0.17
Consensus pattern (19 bp):
GAATAAACAAACAAGAATG
Found at i:34343 original size:8 final size:8
Alignment explanation
Indices: 34330--34369 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
34320 ATCCTTCACC
34330 AAAAGAAA
1 AAAAGAAA
34338 AAAAGAAA
1 AAAAGAAA
34346 GAAAAGAAA
1 -AAAAGAAA
34355 AAAAG-AA
1 AAAAGAAA
34362 AAAAGAAA
1 AAAAGAAA
34370 TTTATTCCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.23
8 15 0.50
9 8 0.27
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAGAAA
Found at i:34352 original size:17 final size:17
Alignment explanation
Indices: 34330--34362 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
34320 ATCCTTCACC
34330 AAAAGAAAAAAAGAAAG
1 AAAAGAAAAAAAGAAAG
34347 AAAAGAAAAAAAGAAA
1 AAAAGAAAAAAAGAAA
34363 AAAGAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (17 bp):
AAAAGAAAAAAAGAAAG
Found at i:41367 original size:2 final size:2
Alignment explanation
Indices: 41360--41398 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
41350 TAATGTCCTA
41360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
41399 TGCAAATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
AT
Found at i:56641 original size:36 final size:36
Alignment explanation
Indices: 56594--56665 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
56584 TCCAACCTTT
*
56594 CATTTCATGTTTTTAAGTTGTCCAAAACCAAAAAAA
1 CATTTCATGTTTTTAAGTTATCCAAAACCAAAAAAA
56630 CATTTCATGTTTTTAAGTTATCCAAAACCAAAAAAA
1 CATTTCATGTTTTTAAGTTATCCAAAACCAAAAAAA
56666 ACATAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (36 bp):
CATTTCATGTTTTTAAGTTATCCAAAACCAAAAAAA
Found at i:59396 original size:153 final size:153
Alignment explanation
Indices: 59155--59617 Score: 757
Period size: 153 Copynumber: 3.0 Consensus size: 153
59145 GGGAAGAACT
*
59155 GGTGTCCTTGTACATCTTCCAAATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTCTTTCCTT
1 GGTGTCCTTGTACATCTTCCAAATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTGTTTCCTT
* * * *
59220 GGCAAAAACTTCTTCTACATCATAATTCTTTTTAGCACTGCCAAAAGTTTTGCTTATTCTCCTGC
66 GGCAAAAACATCGTCCACATCATAATTCTTTTTAGCACTGCCAAAAGTATTGCTTATTCTCCTGC
59285 TCTGCCTAGGCATTGGATTTGAA
131 TCTGCCTAGGCATTGGATTTGAA
* *
59308 GGTGTCCTTGTACATTTTCCATATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTGTTTCCTT
1 GGTGTCCTTGTACATCTTCCAAATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTGTTTCCTT
* * * *
59373 AGCAAAAACATCGTCCACATCATACTTCTTTCTAGCACTGCCAAAAGTATTGCTTATTTTCCTGC
66 GGCAAAAACATCGTCCACATCATAATTCTTTTTAGCACTGCCAAAAGTATTGCTTATTCTCCTGC
*
59438 TCTGCCTAGGCATTGGATTTGAG
131 TCTGCCTAGGCATTGGATTTGAA
* * *
59461 GGTGTCCTTGTACATCTTCCAAATCGTTGCACAAAATTATCTATGTCTTCGCAATGTGTTTCCTT
1 GGTGTCCTTGTACATCTTCCAAATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTGTTTCCTT
59526 GGCAAAAACATCGTCCACATCATACA-TCTTTTTAGCACTGCCAAAAGTATTGCTTATTCTCCTG
66 GGCAAAAACATCGTCCACATCATA-ATTCTTTTTAGCACTGCCAAAAGTATTGCTTATTCTCCTG
**
59590 CTCTGCCTAGGCATTAAATTTGAA
130 CTCTGCCTAGGCATTGGATTTGAA
59614 GGTG
1 GGTG
59618 AACTGTTTAT
Statistics
Matches: 285, Mismatches: 24, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
153 285 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (153 bp):
GGTGTCCTTGTACATCTTCCAAATCGTTGCTCAAGATTATCTATGTCTTTGCAATGTGTTTCCTT
GGCAAAAACATCGTCCACATCATAATTCTTTTTAGCACTGCCAAAAGTATTGCTTATTCTCCTGC
TCTGCCTAGGCATTGGATTTGAA
Found at i:60858 original size:14 final size:14
Alignment explanation
Indices: 60839--60873 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
60829 TCTTGACAAA
60839 AAAAAATGAAAAAG
1 AAAAAATGAAAAAG
*
60853 AAAAAAAGAAAAAG
1 AAAAAATGAAAAAG
*
60867 AAGAAAT
1 AAAAAAT
60874 CCTAGTTCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (14 bp):
AAAAAATGAAAAAG
Done.