Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014657.1 Corchorus olitorius cultivar O-4 contig14690, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78906

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1880--1912
14
2.4
14
90
10
50
42
0
9
48
1.35
13727--14112
30
12.7
30
89
1
547
31
18
18
31
1.95
13727--14180
90
4.9
90
86
3
566
31
17
18
32
1.94
13785--14181
30
12.9
32
87
2
193
31
17
17
32
1.94
13785--14177
60
6.4
62
90
2
316
31
17
18
32
1.94
21060--21093
3
11.3
3
93
0
59
64
0
2
32
1.08
21417--21469
12
4.2
13
79
16
51
41
5
0
52
1.25
21421--21470
22
2.2
24
85
7
68
44
4
0
52
1.20
23634--23659
7
3.7
7
100
0
52
26
0
30
42
1.56
25329--25366
4
9.5
4
86
11
51
50
2
0
47
1.15
25736--25813
27
2.9
27
92
0
129
33
10
50
6
1.62
45378--45412
6
5.8
6
96
0
61
34
2
34
28
1.72
48284--48317
5
6.6
5
96
3
59
0
20
17
61
1.34
67589--67644
29
2.0
28
92
3
94
39
21
10
28
1.87
67722--67822
33
3.1
33
94
0
175
11
32
35
19
1.89
69288--69312
5
5.0
5
100
0
50
80
0
20
0
0.72
74200--74233
3
11.3
3
87
0
50
70
0
26
2
1.01

Tables:   1

The End!