Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014658.1 Corchorus olitorius cultivar O-4 contig14691, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15463
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Found at i:177 original size:26 final size:26
Alignment explanation
Indices: 145--202 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
135 GTGTTTGAGT
*
145 GTGAGCGGCGGTGAGGGTAAGGAAGA
1 GTGAGCGGCGGTGAGAGTAAGGAAGA
171 GTGAGCGGCGGTGAGAGTAAGGAAGA
1 GTGAGCGGCGGTGAGAGTAAGGAAGA
197 GTGAGC
1 GTGAGC
203 TAGCGGCTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.09, G:0.52, T:0.12
Consensus pattern (26 bp):
GTGAGCGGCGGTGAGAGTAAGGAAGA
Found at i:4063 original size:14 final size:14
Alignment explanation
Indices: 4026--4064 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
4016 TTTGCGCTAA
4026 TTTTTGTGTTTTTC
1 TTTTTGTGTTTTTC
*
4040 TTTTCT-TGTTTTTG
1 TTTT-TGTGTTTTTC
4054 TTTTTGTGTTT
1 TTTTTGTGTTT
4065 AACAGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 1 0.05
14 20 0.91
15 1 0.05
ACGTcount: A:0.00, C:0.05, G:0.15, T:0.79
Consensus pattern (14 bp):
TTTTTGTGTTTTTC
Found at i:9205 original size:33 final size:33
Alignment explanation
Indices: 9167--9235 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
9157 TTTGGGGTCT
*
9167 GATGAGTTGTCACCTGAACTTGCAATCTTAAGA
1 GATGAGTTGTCACCTGAACTTGCAATCTTAAAA
9200 GATGAGTTGTCACCTGAACTTGCAATCTTAAAA
1 GATGAGTTGTCACCTGAACTTGCAATCTTAAAA
9233 GAT
1 GAT
9236 TGTATTGCAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (33 bp):
GATGAGTTGTCACCTGAACTTGCAATCTTAAAA
Found at i:10283 original size:54 final size:54
Alignment explanation
Indices: 10190--10385 Score: 261
Period size: 54 Copynumber: 3.6 Consensus size: 54
10180 GTTAGTCGTG
* * * *
10190 TGTCTTCTCGTGT-TCTTCGTGTGTTTGCTGGCCTCGCCTCACTGCGGAGAGTCGT
1 TGTCTTCTCGTGTACCTTC--GTGTCTGCTGGCCTCGCCTCACTGCGGAGAGCCAT
* * * *
10245 TGTCTTCTCGTGTATCTTCGTGTCTGCTGGCCTCGCCTCAATGTGGAGAGCCAA
1 TGTCTTCTCGTGTACCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGAGCCAT
* *
10299 TGTCTTCTCGTGTACCTTCATGTCTGTTGGCCTCGCCTCACTGCGGAGAGCCAT
1 TGTCTTCTCGTGTACCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGAGCCAT
10353 TGTCTTCTCGTGTACCTTCGTGT-TCGCTGGCCT
1 TGTCTTCTCGTGTACCTTCGTGTCT-GCTGGCCT
10386 TGCCACTGTC
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 106 0.85
55 13 0.10
56 5 0.04
ACGTcount: A:0.09, C:0.29, G:0.26, T:0.36
Consensus pattern (54 bp):
TGTCTTCTCGTGTACCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGAGCCAT
Found at i:13804 original size:332 final size:331
Alignment explanation
Indices: 10477--15463 Score: 5489
Period size: 332 Copynumber: 15.0 Consensus size: 331
10467 TTTTATGAAC
* *
10477 AAATATATATTTTTTATGAGTGTTATTTCCAAAAGTTGAGCAAAATTTTTTCGGGTCAGTTTTTG
1 AAATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTTG
* * * * * * * * * * *
10542 CAAAATTTAAGCCGAAATCGTATACAAATCATCACGGTTTTTGTCTGAAAATGCGTCGCAGAGTC
66 CAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGCC
* * *
10607 CCGACTTAATTTGGCACGACTTTTGGTGCTAAGACTCCTTAAAATATCGATATTCATCTAACTAA
131 CCGACTCAATTT-GCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACTAA
** ** * * *
10672 ATCTCGGCCACATTTTATTTAAGGATTTGTTTCCACGAGCATCTGAATCTTGTTTTG-ATTTATC
195 ATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAAT-
* * * *
10736 TAGAAATTAATTCAGAAAAAATAAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTTT
259 TAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTTT
* *
10801 TTACGTTG
324 TGACGTTA
* * *
10809 AAATATATA-TTTTTATCGAGTGTTGTAAT-AAAAAATTGAGCAAAATTTTTTCGGGTTAGTTTT
1 AAATATATATTTTTTAT-GAGTGTTGT-TTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
* *
10872 TGCAAAATTTAAGCCGAAATTGTGTACTAACCATCAC-GATTTTTGGCTAAAAACGCGTCCCGGA
64 TGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTCCCGGG
* * *
10936 GCCCCGACTCAGTTTTCAACGATTTTTGGTGAC-AAGACTCCTTAAGATATCCATATTCATCTAA
128 GCCCCGACTCAATTTGC-ACGATTTTTGGTG-CTAAGACTCCTTAAAATATCCATATTCATCTAA
* * * * * *
11000 -TCAGATCTCGGTCACATAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATATTTTGACT
191 CT-AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAAT
* *
11064 TAATTAGATATTT-TTCGAAAAAAATTAGAAAAACGATTTTAGAAGCGT-ATAATGCTCATCAAT
255 TAATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGA-AATGCTCATCAAT
*
11127 CTTTTTGACTTTAA
319 CTTTTTGACGTT-A
11141 AATATATATATTTTTTATGAGTG--GTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
1 AA-ATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
* * * * ** *
11204 GCAAAATTTAAGCCGAAATCGTGTACTAACAATCGCAGATTTTGGCTGAAAACGCAACCCGGGGA
65 GCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGC
* *
11269 CCCGACTCAATTTTGCACGGA-TTTTGGTGCTAAGACTCCTTAAAATATCGATATTCATCTAACC
130 CCCGACTCAA-TTTGCAC-GATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACT
* ** * *
11333 AAATCTCAGCCACATTTTATTTAAGGATTTGTTTTCACGAGCATCTGAATCATGTTTCG-ATTTA
193 AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAA
* * * * ** * *
11397 TCTAGAAATTGATTCGGAAAAAATAAAAAAAACGATATTAGAAGCGTGAAAAACTCTTCAATATT
258 T-TAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAAT-CT
* *
11462 TTTTTATGTTA
321 TTTTGACGTTA
* * ** ** * * ***
11473 AATTATAGATTTTTTACCAGTGTTGTGGCCAAAAATTGTGAAAAAAAAATTTCGGGTCAGTTTTT
1 AAATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAG-CAAAATTTTTTCGGGTCAGTTTTT
* * * * ** *
11538 CCAAAATTTTAGCCGAAATCATGTAGTAACCATCACAGGTTTTT-GCTAAAAACGCGTTTCTGGG
65 GCAAAATTTAAGCCGAAATCGTGTACTAACCATCACA-GTTTTTGGCTAAAAACGCGTCCCGGGG
* * ** * * * * * * *
11602 CCCTGTCTCAGATTTGCATAATTTTTAGCGATAAAACTTCTTGAAATATCTATATTCATCTAA-T
129 CCCCGACTCA-ATTTGCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACT
* * * * *
11666 CAAATCTCAGCCACATTGCATTTAAGGATTTGTTTTTACGAGCAAT-TAAATCAAGTTTCGAGTT
193 -AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGC-ATCTGAATCATGTTTCGAATT
*
11730 AATTAGATATTTATTCGG-AAAAATTGGAAAAACGATATT-GTAAGCGTGAAATGCTCATCAATC
256 AATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAG-AAGCGTGAAATGCTCATCAATC
* *
11793 TTTTTGGCGTTG
320 TTTTTGACGTTA
* ** ***
11805 AAATATATA-TTTTTATTGAGTGTTGTAGT-CAAAAATTGTGAAAAAAAAAATTTCGGGTCAGTT
1 AAATATATATTTTTTA-TGAGTGTTGT-TTCCAAAAA-T-TGAGCAAAATTTTTTCGGGTCAGTT
* * * * * * * ** * *
11868 TTTGCAAAATTAAAGCCGAAATCGTATATTAACCATCATAATTTTTGACTGAAAACGATTCGCAG
62 TTTGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGG
* * ** * *
11933 AGCCCCGACTCAATTTGGCATGA-TTTTGGTG-TCAAGACTCCTTATGATATTCATATTCATTTA
127 GGCCCCGACTCAATTT-GCACGATTTTTGGTGCT-AAGACTCCTTAAAATATCCATATTCATCTA
* * * * * * *
11996 A-T-CAT-TTGGTCACATAGGATTTAAAGATTTGTTTTTACGAGCATCTAAATCATGTTTCGAGT
190 ACTAAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAAT
* * * *
12058 TAATTAGATATTTATTCGGATAAATTTGGAAAAACGATTTTAGAAGCGTGAAATGCTCATCAATC
255 TAATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATC
* *
12123 ATTTTGACTTTA
320 TTTTTGACGTTA
*
12135 AAATATATCTATTTTTTATGAGTTTTGTTTCCAAAAATTGAGCAAAAATTTTTTCGGGTCAGTTT
1 AAATATA--TATTTTTTATGAGTGTTGTTTCCAAAAATTGAGC-AAAATTTTTTCGGGTCAGTTT
* * * *
12200 TTGCAAAATTTGAGCCGAAATCGTGTATTAACCATCACGGTTTTTGGCTAAAAACGCGTCCTGGG
63 TTGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGG
* * * * *
12265 GCCCCGGCTCAATTTTGCACGATTTTTGGTTCCAAGACTCCTGAAGATATCCATATTCATCTAA-
128 GCCCCGACTCAA-TTTGCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAAC
* * *
12329 TCAAATCTCGGTCACATAGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAGTT
192 T-AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATT
* *
12394 AATTAGATATTTATTCGGAAAAAATTGGAAAAACGATTTTAGAAGCGTGAAATGCTCATCAATCT
256 AATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCT
*
12459 TTTTGACTTTAA
321 TTTTGACGTT-A
* *
12471 AATATATATATTTTTTATGAGTTTTGTTTACAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
1 AA-ATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
* * *
12536 GTAAAATTTAAGTCGAAATCGTGTACTAACCATCACGGTTTTTGGC-AAAAACGCGTCCCGGGGC
65 GCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGC
* * * *
12600 CCCGGCTCAATTTTCAACGATTTTTGGTG-TCAAGACTCCTTAAGATATCCATATTCATTTAA-T
130 CCCGACTCAATTTGC-ACGATTTTTGGTGCT-AAGACTCCTTAAAATATCCATATTCATCTAACT
* * * *
12663 -CAT-TCGGTCACATAGGATTTAAGGATTTGTTTTTACGAGCATCTAAATCATGTTTCGAATTAA
193 AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAA
* * *
12726 TTAGATATTTATTCGGATAAAATTGGAAAAACGATTTTAGAAGCGTGAAATGCTCATCAATCTTT
258 TTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTT
*
12791 TTGACTTTAA
323 TTGACGTT-A
*
12801 AATATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAAATTTTTCGGGTCAGTTTTT
1 AA-ATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
* * * * *
12866 GCAAAATTTAAGCCGAAATCGTATACTAACCATCACAGTTTTTGGCTGAAAACGCGTCGCAGAGC
65 GCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGC
* *
12931 CCCGACTCAATTTGGCACGATTTTTGGTGCTAAGACTCCTCAAAATATCGATATTCATCTAACTA
130 CCCGACTCAATTT-GCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACTA
** ** * * *
12996 AATCTCGGCCACATTTTATTTAAGGATTTGTTTCCACGAGCATCTGAATCTTGTTTTG-ATTTAT
194 AATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAAT
* * * *
13060 CTAGAAAGTAATTCAGG-AAAAATAAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTT
259 -TAGATATTTATTC-GGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTT
* *
13124 TTTGGCGTTG
322 TTTGACGTTA
* * * * *
13134 AAATATATA-TTTTTATCGAGTGTTGTAGT-CAAAAATTGAGCATAATATTTTCAGGACAGTTTT
1 AAATATATATTTTTTAT-GAGTGTTGT-TTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
* * **
13197 TGCAAAATTTAAGGCGAAATCGTGTAC---GCATCACAGTTTTTTGGCTAAAAACGCGTTTCGGG
64 TGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTCCCGGG
* * * * *
13259 GCCCCGGCTCAATTTTCAACGATTTTTGGGGCCAAGACTCCTTAAGATATCCATATTCATCTAA-
128 GCCCCGACTCAATTTGC-ACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAAC
* * ** * *
13323 TCAAATCTCGGTCACATAGGATTTAAGGATTTGTTTTTACGATTAATCTGTATCATGTTTCGAGT
192 T-AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGA-GCATCTGAATCATGTTTCGAAT
* * * *
13388 TAATTAGATTTTTATTCGGAAAAAATTGGAAAAACGATTTTAGAAGTGTGAAATGCTCATCAATC
255 TAATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATC
*
13453 ATTTTT-ACTTTA
320 -TTTTTGACGTTA
*
13465 AAATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAACTTTTTCGGGTCAGTTTTTG
1 AAATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTTG
* * * * * * *
13530 CAAAATTTAAGCCGAAATAGTATACTAACCATCACAGTTTTTGGCTGAAAACGCATCGCAGAGCC
66 CAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGCC
* * * * *
13595 CCGACACAATTTGGCACGATTTTTGGTGCTAAAACTCCTAAAAATATCGATATTCATCGAACTAA
131 CCGACTCAATTT-GCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACTAA
** ** * * * *
13660 ATCTCGGCCACATTTTATTTAAGGATTTGTTTCCACGAGCTTCTGAATCTTGTTTCG-TTTTATC
195 ATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAAT-
* * * * *
13724 TAGAAATTAATTCAGAAAAAATAAGTAAAACGATATTAGAAGCGTGAAATGCTCATCAA-CATTT
259 TAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATC-TTT
* *
13788 TTGGCGTTG
323 TTGACGTTA
* * *
13797 AAATATATA-TTTTTATCGAGTGTTGTAGT-CAAAAATCGAGCAAAATTTTTTCGGGTCAGGTTT
1 AAATATATATTTTTTAT-GAGTGTTGT-TTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
* * * * *
13860 TGCAAAATTTAAGCCGAAATCGTGAACTGACCATCACGGTTTTTGGCAAAAAACGCGTCCCGGTG
64 TGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGG
* * * *
13925 CCCCGACTCAATTTTCAACGATTTTTGGTGCCAAGACTCCTTAAGATATCCATATTCATCTGA-T
129 CCCCGACTCAATTTGC-ACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACT
* * *
13989 CAAATCTCGGTCACATAGGATTTAAGGATTTGTTTTTACGAGAATCTGAATCATGTTTC-AAGTT
193 -AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAA-TT
* *
14053 AATTTGATATTTATTCGGAAAAAATTGGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCT
256 AATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCT
* *
14118 TTTTGGCGTTG
321 TTTTGACGTTA
* * ** *
14129 AAATATATA-TTTTTATCGAGTGTTGTAGT-AAAAAATTGAGTGATATTTTTTCGGGTCAGTTTT
1 AAATATATATTTTTTAT-GAGTGTTGT-TTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
* *
14192 TGCAAAATTAAAGCCGAAATTGTGTACTAACCATCAC-GATTTTTGGCTAAAAACGCGTCCCGGG
64 TGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAG-TTTTTGGCTAAAAACGCGTCCCGGG
* * * * *
14256 GCCCCGGCTCAATTTTCAACGATTTTTGGTG-TCAAGACTCCGTAAGATATCCATATTCATTTAA
128 GCCCCGACTCAATTTGC-ACGATTTTTGGTGCT-AAGACTCCTTAAAATATCCATATTCATCTAA
* * * *
14320 -TCAAATCTCGGACACATAGGATTGAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAGT
191 CT-AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAAT
* * *
14384 TAATTAGATATTTATTCGGAAAAAATTGGAAAAATGATTTTAGAAGCGTGAAATGCTCATCAATC
255 TAATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATC
*
14449 TTTTTGACTTTAA
320 TTTTTGACGTT-A
14462 AATATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
1 AA-ATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTT
* * * * * *
14527 GCAAAATTTAAGCCGAAATCGTATACTAACCATCATAGTTTTTGGCTGAAAACGCGT-GCAGAGC
65 GCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGC
* * * *
14591 CCCTACTCAATTTGCCACGATTTTTGGTGCTAAAACTCCTCAAAATATCGATATTCATCTAACTA
130 CCCGACTCAATTTG-CACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACTA
* ** ** * * *
14656 AGTCTCGGCCACATTTTATTTAAGGATTTGTTTCCACGAGCATCTGAATCTTGTTTAG-ATTTAT
194 AATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAAT
* * ** *
14720 CTAGAAATTAATT-AAAAAAAATAAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTT
259 -TAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTT
* * *
14784 TTGGCATTG
323 TTGACGTTA
* *
14793 AAATATATA-TTTTTATCGAGTGTT-TTAGT-CAATAATTGAGGAAAATTTTTTCGGGTCAGTTT
1 AAATATATATTTTTTAT-GAGTGTTGTT--TCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTT
*
14855 TTGCAAAATTTAAGCCGAAATCGTGTACT-ACCATCACGGTTTTTGGCTAAAAACGCGTCCCGGG
63 TTGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGG
* * * * * * *
14919 GCTCCGGCTCAATTTTCAACGATTTCTGGTGGTAAGACTCCTCAAAATATCGATATTCATCTAAC
128 GCCCCGACTCAATTTGC-ACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAAC
** ** * * * *
14984 TAAATCTCGGCCACATTTTATTTAAGGATTTGTTTCCACGAGCGTCTGAATCTTGTTTTG-ATTT
192 TAAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTA
* * ** * *
15048 ATCTAGAAATTAATTCAAAAAAAAATAAGAAAAACTATATTAGAAGCGTGAAATGCTCATCAATC
257 AT-TAGATATTTATTC-GGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATC
*
15113 TTTTTGACATTAA
320 TTTTTGACGTT-A
15126 AATATATATATATTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
1 AA-ATATATAT-TTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTT
* ** * *
15191 TGCAAAATTTTAGCCGAAATATTGTACTAACCATCACGGTTTTTGGCTAAAAACTCGTCCCGGGG
64 TGCAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGG
* * * * * * * *
15256 CCTCGGCTCAATTTTTCACGATTTTTGGTTCCAAGACTCCTTAAAATATCAATATTTATCTAACC
129 CCCCGACTCAA-TTTGCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACT
* * *
15321 AAATCTCGGCCACATTGGATTTAAAGATTTATTTTTAC-AGGCAT-TAGAATC-CGATTTC-AAT
193 AAATCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGA-GCATCT-GAATCATG-TTTCGAA-
* * * * * **
15382 TTAATTAGAAATTAATTCGGAGAAAA-TAG---GACGATATTAGAAGCGTGAAAAGCTTTTCAAT
254 TTAATTAGATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAAT
* * * *
15443 CCTTTTGGCTTTG
319 CTTTTTGACGTTA
15456 AAATATAT
1 AAATATAT
Statistics
Matches: 3984, Mismatches: 550, Indels: 245
0.83 0.12 0.05
Matches are distributed among these distances:
328 2 0.00
329 118 0.03
330 624 0.16
331 642 0.16
332 1228 0.31
333 472 0.12
334 477 0.12
335 254 0.06
336 153 0.04
337 14 0.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (331 bp):
AAATATATATTTTTTATGAGTGTTGTTTCCAAAAATTGAGCAAAATTTTTTCGGGTCAGTTTTTG
CAAAATTTAAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAACGCGTCCCGGGGCC
CCGACTCAATTTGCACGATTTTTGGTGCTAAGACTCCTTAAAATATCCATATTCATCTAACTAAA
TCTCGGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCATGTTTCGAATTAATTA
GATATTTATTCGGAAAAAATTAGAAAAACGATATTAGAAGCGTGAAATGCTCATCAATCTTTTTG
ACGTTA
Done.