Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014659.1 Corchorus olitorius cultivar O-4 contig14692, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  165341

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--1353
661
1.8
654
81
6
1452
32
14
15
38
1.87
6536--6560
12
2.1
12
100
0
50
24
0
0
76
0.80
15634--15685
17
3.2
16
76
20
54
76
15
5
1
1.05
15634--15668
11
3.2
11
87
0
52
80
14
2
2
0.95
21001--21042
6
7.0
6
84
10
59
64
21
14
0
1.29
21001--21038
17
2.2
18
90
4
60
65
21
13
0
1.26
22596--22659
27
2.2
28
79
15
69
43
4
4
46
1.45
22597--22662
29
2.2
30
79
15
75
42
4
4
48
1.44
27383--27459
30
2.6
30
89
2
111
40
7
10
41
1.68
35184--35209
7
3.7
7
100
0
52
57
0
42
0
0.98
36002--36134
66
2.0
66
98
0
257
24
22
24
27
2.00
38921--38956
6
6.0
6
96
0
63
47
0
36
16
1.47
41332--41380
24
2.0
24
96
0
89
30
34
4
30
1.76
41887--41938
27
1.9
27
88
0
77
5
17
15
61
1.52
42374--42430
5
11.4
5
94
5
98
59
0
0
40
0.97
44852--44883
13
2.5
13
94
0
55
21
43
0
34
1.53
47735--47770
6
6.0
6
100
0
72
50
0
16
33
1.46
53331--53387
15
3.8
15
76
0
51
8
17
49
24
1.75
56668--56774
53
2.0
53
90
0
169
39
26
6
28
1.81
57029--57203
87
2.0
87
95
2
316
22
28
16
32
1.96
64825--64879
18
3.0
18
82
10
58
41
0
5
52
1.24
64876--64926
26
2.0
26
84
3
68
62
3
0
33
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66780--67048
133
2.0
131
85
4
373
38
11
1
49
1.46
76572--76603
2
16.0
2
100
0
64
50
0
0
50
1.00
77954--77979
5
5.2
5
100
0
52
0
0
19
80
0.71
84807--84849
21
2.0
21
86
0
59
18
2
53
25
1.56
89044--89190
79
1.9
79
82
2
188
40
20
10
28
1.85
89788--89831
23
1.9
23
95
0
79
70
0
15
13
1.17
100509--100533
6
4.2
6
100
0
50
36
0
48
16
1.46
108993--109040
23
2.1
23
96
0
87
33
18
4
43
1.69
136409--136448
6
6.7
6
88
0
53
30
20
27
22
1.98
136415--136467
18
2.9
18
88
0
70
32
16
28
22
1.96
140218--140253
18
2.0
18
100
0
72
33
11
27
27
1.91
145379--145403
9
2.8
9
100
0
50
52
12
0
36
1.39
154791--154830
2
21.0
2
85
10
57
50
0
0
50
1.00
154794--154831
9
4.1
9
90
6
58
47
0
0
52
1.00
165209--165289
9
9.0
9
84
0
81
23
2
61
12
1.42
165241--165289
3
16.3
3
89
0
62
26
2
65
6
1.27

Tables:   1

The End!