Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014664.1 Corchorus olitorius cultivar O-4 contig14697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47719

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--41
2
19.0
2
100
0
76
50
0
0
50
1.00
1424--1455
15
2.1
15
100
0
64
34
6
31
28
1.82
16432--16457
7
3.7
7
100
0
52
46
11
30
11
1.76
21745--21770
5
5.2
5
100
0
52
0
38
0
61
0.96
22884--22929
10
4.5
10
83
5
56
34
0
8
56
1.30
22829--22910
31
2.6
31
75
5
76
31
3
7
57
1.44
22860--22929
21
3.4
20
78
9
61
35
1
8
54
1.40
28955--29137
27
6.8
27
85
1
251
16
15
27
40
1.89
28956--29137
54
3.4
54
94
0
310
17
14
27
40
1.88
29677--29706
15
2.0
15
100
0
60
6
33
13
46
1.69
35084--35134
25
2.0
25
85
7
68
39
0
0
60
0.97
35054--35136
22
3.8
21
74
19
73
38
1
1
59
1.13
37485--37527
22
2.0
22
90
0
68
51
13
9
25
1.71
38026--38057
6
5.3
6
100
0
64
34
0
31
34
1.58
45981--46028
3
16.0
3
100
0
96
33
0
0
66
0.92
46052--46094
21
2.0
21
86
0
59
46
9
9
34
1.68
47068--47276
28
6.8
28
76
19
186
35
16
15
32
1.90
47068--47276
62
3.3
62
91
5
325
35
16
15
32
1.90

Tables:   1

The End!