Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014667.1 Corchorus olitorius cultivar O-4 contig14700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 54314
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:9515 original size:12 final size:11
Alignment explanation
Indices: 9498--9599 Score: 97
Period size: 12 Copynumber: 9.2 Consensus size: 11
9488 TAACTACTCT
9498 TATTAATATTAA
1 TATTAATA-TAA
9510 TATTAATATTAA
1 TATTAATA-TAA
*
9522 TATATATTATAA
1 TAT-TAATATAA
9534 TATATAATATAA
1 TAT-TAATATAA
9546 TA-TAATATAA
1 TATTAATATAA
9556 TA-TAATATAA
1 TATTAATATAA
9566 TATT-ATAATAA
1 TATTAAT-ATAA
9577 TA-TAAT-TATA
1 TATTAATATA-A
*
9587 TAATAATATAA
1 TATTAATATAA
9598 TA
1 TA
9600 ACATATTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 15
0.83 0.02 0.15
Matches are distributed among these distances:
9 2 0.02
10 26 0.32
11 16 0.20
12 33 0.41
13 4 0.05
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TATTAATATAA
Found at i:9537 original size:5 final size:5
Alignment explanation
Indices: 9501--9599 Score: 96
Period size: 5 Copynumber: 19.0 Consensus size: 5
9491 CTACTCTTAT
*
9501 TAATA TTAATA TTAATA TTAATA T-ATA TTATA -ATATA TAATA TAATA
1 TAATA -TAATA -TAATA -TAATA TAATA TAATA TA-ATA TAATA TAATA
*
9548 TAATA TAATA TAATA TAATA TTATAA TAATA TAAT- TATATAA TAATA
1 TAATA TAATA TAATA TAATA TAAT-A TAATA TAATA TA-AT-A TAATA
9595 TAATA
1 TAATA
9600 ACATATTATA
Statistics
Matches: 83, Mismatches: 3, Indels: 15
0.82 0.03 0.15
Matches are distributed among these distances:
4 6 0.07
5 51 0.61
6 24 0.29
7 2 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TAATA
Found at i:9600 original size:8 final size:8
Alignment explanation
Indices: 9513--9600 Score: 88
Period size: 8 Copynumber: 10.4 Consensus size: 8
9503 ATATTAATAT
9513 TAATATTAA
1 TAATA-TAA
*
9522 TATATATTA
1 TA-ATATAA
9531 TAATAT-A
1 TAATATAA
9538 TAATATAATA
1 TAATAT-A-A
9548 TAATATAATA
1 TAATAT-A-A
9558 TAATATAA
1 TAATATAA
*
9566 TATTATAA
1 TAATATAA
9574 TAATATAA
1 TAATATAA
*
9582 TTATATAA
1 TAATATAA
9590 TAATATAA
1 TAATATAA
9598 TAA
1 TAA
9601 CATATTATAG
Statistics
Matches: 70, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
7 7 0.10
8 36 0.51
9 7 0.10
10 20 0.29
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
TAATATAA
Found at i:10006 original size:2 final size:2
Alignment explanation
Indices: 10001--10057 Score: 64
Period size: 2 Copynumber: 28.0 Consensus size: 2
9991 TCATATGTAG
*
10001 TA TA TA TA GTA TA -A TA TA TA TA TA TA TA TA TA TA TA TA GA TA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10043 GTA -A TA TA GTA TA TA
1 -TA TA TA TA -TA TA TA
10058 ATGGCTTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
1 2 0.04
2 40 0.83
3 6 0.12
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (2 bp):
TA
Found at i:13832 original size:26 final size:27
Alignment explanation
Indices: 13798--13850 Score: 81
Period size: 28 Copynumber: 2.0 Consensus size: 27
13788 TATATATACT
13798 CCCTATGTTCC-TTTTATTTGTCATCA
1 CCCTATGTTCCTTTTTATTTGTCATCA
*
13824 CCCTTTGTTCCTTTTTTATTTGTCATC
1 CCCTATGTTCC-TTTTTATTTGTCATC
13851 TTACACTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 10 0.42
28 14 0.58
ACGTcount: A:0.11, C:0.26, G:0.08, T:0.55
Consensus pattern (27 bp):
CCCTATGTTCCTTTTTATTTGTCATCA
Found at i:14073 original size:2 final size:2
Alignment explanation
Indices: 14066--14115 Score: 65
Period size: 2 Copynumber: 27.5 Consensus size: 2
14056 TGAATGGGAG
14066 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA -A TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14105 -A TA -A TA TA TA T
1 TA TA TA TA TA TA T
14116 CATAGTTATT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
1 5 0.12
2 38 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:14111 original size:27 final size:29
Alignment explanation
Indices: 14081--14138 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
14071 ATATATATAT
14081 ATATATAT-ATA-TATTATAATAATAATA
1 ATATATATCATAGTATTATAATAATAATA
* *
14108 ATATATATCATAGTTATTATAGTAGTAATA
1 ATATATATCATAG-TATTATAATAATAATA
14138 A
1 A
14139 AATAGTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 8 0.31
28 3 0.12
30 15 0.58
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (29 bp):
ATATATATCATAGTATTATAATAATAATA
Found at i:15279 original size:22 final size:21
Alignment explanation
Indices: 15216--15307 Score: 87
Period size: 22 Copynumber: 4.3 Consensus size: 21
15206 TATTTTTATG
* *
15216 AAATTTTAATAATCAT-TATA
1 AAATTTTGATAATTATATATA
* *
15236 AAATTTTGGTAATCTCTATATA
1 AAATTTTGATAAT-TATATATA
15258 AAATTTTGATAATTATACTATA
1 AAATTTTGATAATTATA-TATA
* * *
15280 AAGTTTTTATAATAATATTATA
1 AAATTTTGATAATTATA-TATA
15302 AAATTT
1 AAATTT
15308 CGAGAACCTC
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
20 11 0.19
21 4 0.07
22 43 0.74
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (21 bp):
AAATTTTGATAATTATATATA
Found at i:15440 original size:22 final size:22
Alignment explanation
Indices: 15389--15440 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
15379 ATAACCACTT
15389 AATGAAATTTTGATAATCACCC
1 AATGAAATTTTGATAATCACCC
* * *
15411 TATAAAATTTTGATAA-CTTCCC
1 AATGAAATTTTGATAATC-ACCC
15433 AATGAAAT
1 AATGAAAT
15441 GTGAGTAAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (22 bp):
AATGAAATTTTGATAATCACCC
Found at i:15471 original size:46 final size:44
Alignment explanation
Indices: 15402--15516 Score: 124
Period size: 46 Copynumber: 2.6 Consensus size: 44
15392 GAAATTTTGA
** * *
15402 TAATCACCCTATAAAATTTTGATAAC-TTCCCAATGAAATGTGAG
1 TAATCACATTATAAAATTTTGATAACATT-CCAATAAAATATGAG
* * * *
15446 TAAGTGTACATTATGAAATTTTGATAACATTCCGATAAAATATTAG
1 TAA-T-CACATTATAAAATTTTGATAACATTCCAATAAAATATGAG
15492 TAATCACATTATAAAATTTTGATAA
1 TAATCACATTATAAAATTTTGATAA
15517 ACAAACCATG
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
44 22 0.38
45 2 0.03
46 32 0.55
47 2 0.03
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.36
Consensus pattern (44 bp):
TAATCACATTATAAAATTTTGATAACATTCCAATAAAATATGAG
Found at i:15552 original size:22 final size:21
Alignment explanation
Indices: 15527--15670 Score: 94
Period size: 22 Copynumber: 6.6 Consensus size: 21
15517 ACAAACCATG
*
15527 AAATTGTGATAACCTTACTATA
1 AAATTTTGATAACCTT-CTATA
* *
15549 AAATTTTTATAAACCTCCCTATA
1 AAATTTTGAT-AACCT-TCTATA
*
15572 AAATTTTGATAACCTTCATTTGA
1 AAATTTTGATAACCTTC-TAT-A
* *
15595 AAA-TTTGATAATCTTTCTATG
1 AAATTTTGATAA-CCTTCTATA
* * *
15616 AATTTTTGATAACCTCCTTATG
1 AAATTTTGATAACCTTC-TATA
* **
15638 AAATTTT-ATTAACCTCCTACG
1 AAATTTTGA-TAACCTTCTATA
15659 AAATTTTGATAA
1 AAATTTTGATAA
15671 GAACTCTATT
Statistics
Matches: 99, Mismatches: 14, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
21 20 0.20
22 52 0.53
23 27 0.27
ACGTcount: A:0.36, C:0.15, G:0.07, T:0.42
Consensus pattern (21 bp):
AAATTTTGATAACCTTCTATA
Found at i:15663 original size:21 final size:22
Alignment explanation
Indices: 15625--15665 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
15615 GAATTTTTGA
*
15625 TAACCTCCTTATGAAATTTTAT
1 TAACCTCCTTACGAAATTTTAT
15647 TAACCTCC-TACGAAATTTT
1 TAACCTCCTTACGAAATTTT
15666 GATAAGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (22 bp):
TAACCTCCTTACGAAATTTTAT
Found at i:15808 original size:22 final size:22
Alignment explanation
Indices: 15780--15853 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
15770 ATTTCACTAT
*
15780 AAATTTTGATAAACTCATTATG
1 AAATTTTGATAAACTCATAATG
* *
15802 AAATTTT-ATTAACTACACAATG
1 AAATTTTGATAAACT-CATAATG
* *
15824 AAAATTTGATAACCTTC-TAATG
1 AAATTTTGATAAAC-TCATAATG
15846 AAATTTTG
1 AAATTTTG
15854 GTAACCATAC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
21 6 0.15
22 29 0.71
23 5 0.12
24 1 0.02
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (22 bp):
AAATTTTGATAAACTCATAATG
Found at i:15868 original size:22 final size:22
Alignment explanation
Indices: 15775--15880 Score: 69
Period size: 22 Copynumber: 4.9 Consensus size: 22
15765 TGTTAATTTC
15775 ACTAT-AAATTTTGATAAACTCAT
1 ACTATGAAATTTTGAT-AAC-CAT
* *
15798 --TATGAAATTTT-ATTAACTAC
1 ACTATGAAATTTTGA-TAACCAT
* *
15818 ACAATGAAAATTTGATAACC-T
1 ACTATGAAATTTTGATAACCAT
* *
15839 TCTAATGAAATTTTGGTAACCAT
1 ACT-ATGAAATTTTGATAACCAT
* *
15862 ACTATGAATTTTTTATAAC
1 ACTATGAAATTTTGATAAC
15881 ATCTCCTTCT
Statistics
Matches: 62, Mismatches: 14, Indels: 15
0.68 0.15 0.16
Matches are distributed among these distances:
20 1 0.02
21 8 0.13
22 49 0.79
23 4 0.06
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (22 bp):
ACTATGAAATTTTGATAACCAT
Found at i:15921 original size:22 final size:22
Alignment explanation
Indices: 15896--16025 Score: 86
Period size: 22 Copynumber: 6.0 Consensus size: 22
15886 CTTCTGAAAT
*
15896 ACCACATTATAAAATTTTGATA
1 ACCACACTATAAAATTTTGATA
*
15918 ACCACACTATGAAATTTTGATA
1 ACCACACTATAAAATTTTGATA
* * * * *
15940 ATCTCCCTCTAAAATTTTGTTA
1 ACCACACTATAAAATTTTGATA
* * * *
15962 A--TCTCTATGAAATTGTGATA
1 ACCACACTATAAAATTTTGATA
** * *
15982 ATTACACTATGAAATTTTGGTA
1 ACCACACTATAAAATTTTGATA
* *
16004 ACAACACT-TGAAATTTTGATA
1 ACCACACTATAAAATTTTGATA
16025 A
1 A
16026 GCTCACTCTA
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
20 15 0.17
21 13 0.15
22 58 0.67
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (22 bp):
ACCACACTATAAAATTTTGATA
Found at i:16113 original size:22 final size:22
Alignment explanation
Indices: 16086--16328 Score: 150
Period size: 22 Copynumber: 10.8 Consensus size: 22
16076 TTAATCAGAG
16086 TATGAAATTTT-AGTAACCTCCC
1 TATGAAATTTTGA-TAACCTCCC
* *
16108 TGTGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTCCC
* * * *
16130 AATGGAATTCTGATAACCTCCT
1 TATGAAATTTTGATAACCTCCC
* * *
16152 TATAAAATTTTAATAACCTCCA
1 TATGAAATTTTGATAACCTCCC
* **
16174 TATAAAATTTTGATAATATCCC
1 TATGAAATTTTGATAACCTCCC
* * *
16196 TGTGAAATTTAATTTTAATAACCTGCC
1 TATG--A---AATTTTGATAACCTCCC
*
16223 TATGAAATTTTGATAACATCCC
1 TATGAAATTTTGATAACCTCCC
* **
16245 -ATGAAATTGTGATAA-CTACAT
1 TATGAAATTTTGATAACCT-CCC
* * *
16266 TATAAAATTTTGATATCCTAACC
1 TATGAAATTTTGATAACCT-CCC
* * **
16289 TATGAAATTTTGGTAACCACAT
1 TATGAAATTTTGATAACCTCCC
*
16311 TATAAAATTTTGATAACC
1 TATGAAATTTTGATAACC
16329 ACTAAGACAT
Statistics
Matches: 165, Mismatches: 47, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
20 1 0.01
21 15 0.09
22 112 0.68
23 19 0.12
24 1 0.01
25 1 0.01
27 16 0.10
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTCCC
Found at i:16217 original size:49 final size:48
Alignment explanation
Indices: 16157--16252 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 48
16147 CTCCTTATAA
* *
16157 AATTTTAATAACCT-CCATATAAAATTTTGATAATATCCCTGTGAAATTT
1 AATTTTAATAACCTGCC-TATAAAATTTTGATAACATCCC-ATGAAATTT
*
16206 AATTTTAATAACCTGCCTATGAAATTTTGATAACATCCCATGAAATT
1 AATTTTAATAACCTGCCTATAAAATTTTGATAACATCCCATGAAATT
16253 GTGATAACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
48 7 0.16
49 34 0.79
50 2 0.05
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.39
Consensus pattern (48 bp):
AATTTTAATAACCTGCCTATAAAATTTTGATAACATCCCATGAAATTT
Found at i:16250 original size:21 final size:22
Alignment explanation
Indices: 16206--16260 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
16196 TGTGAAATTT
* * *
16206 AATTTTAATAACCTGCCTATGA
1 AATTTTGATAACATGCCCATGA
16228 AATTTTGATAACAT-CCCATGA
1 AATTTTGATAACATGCCCATGA
*
16249 AATTGTGATAAC
1 AATTTTGATAAC
16261 TACATTATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.59
22 12 0.41
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (22 bp):
AATTTTGATAACATGCCCATGA
Found at i:16319 original size:115 final size:115
Alignment explanation
Indices: 16091--16320 Score: 243
Period size: 115 Copynumber: 2.0 Consensus size: 115
16081 CAGAGTATGA
* * * * *
16091 AATTTTAGTAACCTCCCTGTGAAATTTTGATAACCTTCCAATGGAATTCTGATAACCTCCTTATA
1 AATTTTAATAACCTCCCTATGAAATTTTGATAACCATCCAATGAAATTCTGATAACCTCATTATA
* * * *
16156 AAATTTTAATAACCTCCATATAAAATTTTGATAATATCCCTGTGAAATTT
66 AAATTTTAATAACCTCCATATAAAATTTTGATAACATCACTATAAAATTT
* * *
16206 AATTTTAATAACCTGCCTATGAAATTTTGATAA-CATCCCATGAAATTGTGATAA-CTACATTAT
1 AATTTTAATAACCTCCCTATGAAATTTTGATAACCATCCAATGAAATTCTGATAACCT-CATTAT
* * * * *
16269 AAAATTTTGATATCCTAACC-TATGAAATTTTGGTAACCA-CATTATAAAATTT
65 AAAATTTTAATAACCT--CCATATAAAATTTTGATAA-CATCACTATAAAATTT
16321 TGATAACCAC
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
113 2 0.02
114 36 0.38
115 53 0.56
116 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (115 bp):
AATTTTAATAACCTCCCTATGAAATTTTGATAACCATCCAATGAAATTCTGATAACCTCATTATA
AAATTTTAATAACCTCCATATAAAATTTTGATAACATCACTATAAAATTT
Found at i:16760 original size:23 final size:23
Alignment explanation
Indices: 16734--16777 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
16724 TTAAATCTAA
*
16734 TATCCTTATACCT-ATTTTATTTT
1 TATCATTATA-CTAATTTTATTTT
*
16757 TATCATTCTACTAATTTTATT
1 TATCATTATACTAATTTTATT
16778 AAAAAACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.11
23 16 0.89
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (23 bp):
TATCATTATACTAATTTTATTTT
Found at i:21592 original size:15 final size:15
Alignment explanation
Indices: 21574--21608 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
21564 ACTAGTATAT
21574 ATAAATAAATA-ATAA
1 ATAAATAAATATA-AA
21589 ATAAATAAATATAAA
1 ATAAATAAATATAAA
21604 ATAAA
1 ATAAA
21609 ATAAGAAGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 18 0.95
16 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAATAAATATAAA
Found at i:25948 original size:17 final size:17
Alignment explanation
Indices: 25928--25961 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25918 GCTAATAATA
25928 ATTATGAAATAATTATT
1 ATTATGAAATAATTATT
**
25945 ATTATTCAATAATTATT
1 ATTATGAAATAATTATT
25962 CCTCAATTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
ATTATGAAATAATTATT
Found at i:27179 original size:8 final size:9
Alignment explanation
Indices: 27159--27203 Score: 62
Period size: 8 Copynumber: 5.4 Consensus size: 9
27149 AGCTAATTCA
27159 ACTATATAT
1 ACTATATAT
27168 ACTATA-AT
1 ACTATATAT
27176 ACTATA-AT
1 ACTATATAT
27184 A-TATATAT
1 ACTATATAT
27192 A-TATATAT
1 ACTATATAT
27200 ACTA
1 ACTA
27204 GTAAATACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 4 0.12
8 22 0.65
9 8 0.24
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (9 bp):
ACTATATAT
Found at i:38694 original size:98 final size:100
Alignment explanation
Indices: 38561--38747 Score: 306
Period size: 98 Copynumber: 1.9 Consensus size: 100
38551 ATATAATGTA
38561 ATAATGTAATACAAAGTAAATACAAGTATTACTTTTTCGTTGTGCATATATATGTCATTCTTATG
1 ATAATGTAATA-AAAGTAAATACAAGTATTACTTTTTCGTTGTGCATATATATGTCATTCTTATG
*
38626 ACATGCACACACAACCAAACTAGCATTATATATATT
65 ACATGCACACACAACAAAACTAGCATTATATATATT
* * *
38662 ATAATGTAAT-AATGT-AATACAAGTATTACTTTTTCGTTGTGCATCTGTATGTCATTCTTATGA
1 ATAATGTAATAAAAGTAAATACAAGTATTACTTTTTCGTTGTGCATATATATGTCATTCTTATGA
*
38725 CATGCACACACAACAAAATTAGC
66 CATGCACACACAACAAAACTAGC
38748 TAAGGTTTTT
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
98 67 0.83
99 4 0.05
101 10 0.12
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (100 bp):
ATAATGTAATAAAAGTAAATACAAGTATTACTTTTTCGTTGTGCATATATATGTCATTCTTATGA
CATGCACACACAACAAAACTAGCATTATATATATT
Found at i:40229 original size:29 final size:29
Alignment explanation
Indices: 40195--40294 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
40185 ATAACATTAA
40195 GCCCTTATTTGGCCAAATTAAAAGATCGG
1 GCCCTTATTTGGCCAAATTAAAAGATCGG
** **
40224 GCCCTTATTTGAG-CATTTTCAATAACG-TTAG
1 GCCCTTATTTG-GCCAAATT-AA-AA-GATCGG
* *
40255 GCCCTTATTTGGCCAAATTAAAATATCGA
1 GCCCTTATTTGGCCAAATTAAAAGATCGG
*
40284 GCCCCTATTTG
1 GCCCTTATTTG
40295 AGTAATTAGC
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
29 28 0.52
30 6 0.11
31 19 0.35
32 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (29 bp):
GCCCTTATTTGGCCAAATTAAAAGATCGG
Found at i:40259 original size:60 final size:60
Alignment explanation
Indices: 40163--40296 Score: 205
Period size: 60 Copynumber: 2.2 Consensus size: 60
40153 TTCAACAACA
* *
40163 GGCCCTTTTTTGAGCATTTTCCATAACATTAAGCCCTTATTTGGCCAAATTAAAAGATCG
1 GGCCCTTATTTGAGCATTTTCAATAACATTAAGCCCTTATTTGGCCAAATTAAAAGATCG
* * *
40223 GGCCCTTATTTGAGCATTTTCAATAACGTTAGGCCCTTATTTGGCCAAATTAAAATATCG
1 GGCCCTTATTTGAGCATTTTCAATAACATTAAGCCCTTATTTGGCCAAATTAAAAGATCG
* *
40283 AGCCCCTATTTGAG
1 GGCCCTTATTTGAG
40297 TAATTAGCCT
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (60 bp):
GGCCCTTATTTGAGCATTTTCAATAACATTAAGCCCTTATTTGGCCAAATTAAAAGATCG
Found at i:40261 original size:31 final size:31
Alignment explanation
Indices: 40162--40265 Score: 90
Period size: 31 Copynumber: 3.4 Consensus size: 31
40152 TTTCAACAAC
* * *
40162 AGGCCCTTTTTTGAGCATTTTCCATAACATT
1 AGGCCCTTATTTGAGCATTTTCAATAACGTT
* ** *
40193 AAGCCCTTATTTG-GCCAAATT-AA-AA-GATC
1 AGGCCCTTATTTGAG-CATTTTCAATAACG-TT
*
40222 GGGCCCTTATTTGAGCATTTTCAATAACGTT
1 AGGCCCTTATTTGAGCATTTTCAATAACGTT
40253 AGGCCCTTATTTG
1 AGGCCCTTATTTG
40266 GCCAAATTAA
Statistics
Matches: 54, Mismatches: 13, Indels: 12
0.68 0.16 0.15
Matches are distributed among these distances:
29 18 0.33
30 5 0.09
31 30 0.56
32 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (31 bp):
AGGCCCTTATTTGAGCATTTTCAATAACGTT
Found at i:40884 original size:21 final size:21
Alignment explanation
Indices: 40846--40890 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
40836 ATAGTTTAGA
**
40846 TTTAATTTAATTTGTTTTATT
1 TTTAATTTAATTACTTTTATT
* *
40867 TTTAGTTTAATTACTTTTCTT
1 TTTAATTTAATTACTTTTATT
40888 TTT
1 TTT
40891 TATTATTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (21 bp):
TTTAATTTAATTACTTTTATT
Found at i:40972 original size:54 final size:54
Alignment explanation
Indices: 40905--41019 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
40895 ATTTTTTTAA
*
40905 TCCCCTTTATTCTTGAGTGATTCTTAGAGAAGATTCATCTTTAGATAAGTCTAT
1 TCCCCTTTATTCTTGAGTGATTCTTAGAAAAGATTCATCTTTAGATAAGTCTAT
* *
40959 TCCCCTTTGTTCTTGAGTGATTCTTAGAAAAGATTTATCTTTAGATAAGTCTAT
1 TCCCCTTTATTCTTGAGTGATTCTTAGAAAAGATTCATCTTTAGATAAGTCTAT
41013 TCCCCTT
1 TCCCCTT
41020 CTCAGTGGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.43
Consensus pattern (54 bp):
TCCCCTTTATTCTTGAGTGATTCTTAGAAAAGATTCATCTTTAGATAAGTCTAT
Found at i:41194 original size:17 final size:17
Alignment explanation
Indices: 41169--41205 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
41159 TCTCTAAGAA
*
41169 TTTTCTTTTATTTTTTG
1 TTTTCTTTTAATTTTTG
*
41186 TTTTTTTTTAATTTTTG
1 TTTTCTTTTAATTTTTG
41203 TTT
1 TTT
41206 AAGAACTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.08, C:0.03, G:0.05, T:0.84
Consensus pattern (17 bp):
TTTTCTTTTAATTTTTG
Found at i:43891 original size:21 final size:22
Alignment explanation
Indices: 43867--43907 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
43857 AAATTAAATG
*
43867 CAATTTGACCCCTG-TTTTATT
1 CAATTTGACCACTGATTTTATT
43888 CAATTTGACCACTGATTTTA
1 CAATTTGACCACTGATTTTA
43908 GAAATTATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (22 bp):
CAATTTGACCACTGATTTTATT
Found at i:45780 original size:5 final size:5
Alignment explanation
Indices: 45770--45805 Score: 51
Period size: 5 Copynumber: 7.8 Consensus size: 5
45760 AAATGGTTGC
45770 TTTGT TTTG- TTTGT TTTG- TTTGT TTTG- TTTGT TTTG
1 TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTGT TTTG
45806 ATGTTTATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
4 12 0.43
5 16 0.57
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (5 bp):
TTTGT
Found at i:45784 original size:9 final size:9
Alignment explanation
Indices: 45770--45805 Score: 72
Period size: 9 Copynumber: 4.0 Consensus size: 9
45760 AAATGGTTGC
45770 TTTGTTTTG
1 TTTGTTTTG
45779 TTTGTTTTG
1 TTTGTTTTG
45788 TTTGTTTTG
1 TTTGTTTTG
45797 TTTGTTTTG
1 TTTGTTTTG
45806 ATGTTTATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (9 bp):
TTTGTTTTG
Found at i:49445 original size:15 final size:15
Alignment explanation
Indices: 49414--49447 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
49404 ACATGCTTTC
49414 AAAAGATTTTTCGAA
1 AAAAGATTTTTCGAA
49429 AAAATGATTTTTC-AA
1 AAAA-GATTTTTCGAA
49444 AAAA
1 AAAA
49448 ACAAACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.53, C:0.06, G:0.09, T:0.32
Consensus pattern (15 bp):
AAAAGATTTTTCGAA
Found at i:49448 original size:16 final size:15
Alignment explanation
Indices: 49414--49448 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
49404 ACATGCTTTC
49414 AAAAGATTTTTCGAAA
1 AAAAGATTTTTC-AAA
*
49430 AAATGATTTTTCAAA
1 AAAAGATTTTTCAAA
49445 AAAA
1 AAAA
49449 CAAACAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.54, C:0.06, G:0.09, T:0.31
Consensus pattern (15 bp):
AAAAGATTTTTCAAA
Found at i:51095 original size:27 final size:27
Alignment explanation
Indices: 51057--51131 Score: 132
Period size: 27 Copynumber: 2.8 Consensus size: 27
51047 CCCTGTTCAG
*
51057 TTTATTTCAGTTGATCTAGGGCGATCT
1 TTTATTTCAGTTGATCCAGGGCGATCT
51084 TTTATTTCAGTTGATCCAGGGCGATCT
1 TTTATTTCAGTTGATCCAGGGCGATCT
*
51111 TTTATTTCAGTTGACCCAGGG
1 TTTATTTCAGTTGATCCAGGG
51132 TGGTCCTTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (27 bp):
TTTATTTCAGTTGATCCAGGGCGATCT
Found at i:51205 original size:20 final size:21
Alignment explanation
Indices: 51180--51220 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
51170 TCTTTCCTTC
51180 AGTTTACTTC-AGTTAATCCA
1 AGTTTACTTCAAGTTAATCCA
* *
51200 AGTTTATTTCAAGTTGATCCA
1 AGTTTACTTCAAGTTAATCCA
51221 GGGCGATCCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
AGTTTACTTCAAGTTAATCCA
Found at i:51242 original size:57 final size:57
Alignment explanation
Indices: 51144--51257 Score: 160
Period size: 57 Copynumber: 2.0 Consensus size: 57
51134 GTCCTTATTC
51144 AGTTTATTTCAATTGATCCAGGGCGATCTTTCCTTCAGTTTACTT-CAGTTAATCCA
1 AGTTTATTTCAATTGATCCAGGGCGATCTTTCCTTCAGTTTACTTGCAGTTAATCCA
** * *
51200 AGTTTATTTCAAGTTGATCCAGGGCGATCCTTT-CTTTGGTTTATTTGCAGTTGATCCA
1 AGTTTATTTCAA-TTGATCCAGGGCGAT-CTTTCCTTCAGTTTACTTGCAGTTAATCCA
51258 GAGCGATCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
56 12 0.24
57 25 0.49
58 14 0.27
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (57 bp):
AGTTTATTTCAATTGATCCAGGGCGATCTTTCCTTCAGTTTACTTGCAGTTAATCCA
Found at i:51267 original size:94 final size:91
Alignment explanation
Indices: 51111--51279 Score: 221
Period size: 94 Copynumber: 1.8 Consensus size: 91
51101 AGGGCGATCT
* * *
51111 TTTATTTCAGTTGACCCAGGGTGGTCCTTATTCAGTTTATTTCAATTGATCCAGGGCGATCTTTC
1 TTTATTTCAGTTGACCCAGGGCGATCCTTATTCAGTTTATTTCAATTGATCCAGAGCGATCTTTC
*
51176 CTTCAGTTTACTTCAGTTAATCCAAG
66 CTTCAATTTACTTCAGTTAATCCAAG
* * ** *
51202 TTTATTTCAAGTTGATCCAGGGCGATCCTTTCTTTGGTTTATTTGCAGTTGATCCAGAGCGATCT
1 TTTATTTC-AGTTGACCCAGGGCGATCC-TTATTCAGTTTATTT-CAATTGATCCAGAGCGATCT
*
51267 TTTCTTCAATTTA
63 TTCCTTCAATTTA
51280 TTGTAGTTGA
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
91 8 0.12
92 16 0.25
93 12 0.18
94 29 0.45
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.43
Consensus pattern (91 bp):
TTTATTTCAGTTGACCCAGGGCGATCCTTATTCAGTTTATTTCAATTGATCCAGAGCGATCTTTC
CTTCAATTTACTTCAGTTAATCCAAG
Found at i:51300 original size:36 final size:36
Alignment explanation
Indices: 51202--51584 Score: 297
Period size: 36 Copynumber: 10.4 Consensus size: 36
51192 TTAATCCAAG
* * ***
51202 TTTATTTCAAGTTGATCCAGGGCGATCCTTTCTTTGG
1 TTTATTTC-AGTTGATCCAGGGTGATCTTTTCTTCAA
* *
51239 TTTATTTGCAGTTGATCCAGAGCGATCTTTTCTTCAA
1 TTTATTT-CAGTTGATCCAGGGTGATCTTTTCTTCAA
* *
51276 TTTATTGT-AGTTGATCTAGGGCGATCTTTTTCTTCATCA
1 TTTATT-TCAGTTGATCCAGGGTGATC-TTTTCTTCA--A
* * * * * *
51315 GTTTATTTCGATTTGACCCAGGGTGGTC-CTTGTTCAG
1 -TTTATTTC-AGTTGATCCAGGGTGATCTTTTCTTCAA
* *
51352 TTTATTTCAATTGAGCCAGGGTGATCTTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGTGATCTTTTCTTCAA
* * *
51388 TTTATTGCAGTTGATCCAGGGCGATTTTTTCTTCATCA
1 TTTATTTCAGTTGATCCAGGGTGATCTTTTCTTCA--A
* * * * *
51426 GTTTATTTCAATTTGACCCAGGGTGGTC-CTTGTTCAA
1 -TTTATTTC-AGTTGATCCAGGGTGATCTTTTCTTCAA
*
51463 TTTATTTCAATTGATCCAGGGTGATCTTTTCTTCAA
1 TTTATTTCAGTTGATCCAGGGTGATCTTTTCTTCAA
* * * * *
51499 TTTATTTTAATGGATCCAGGGTGGTCTTTTCTTCAG
1 TTTATTTCAGTTGATCCAGGGTGATCTTTTCTTCAA
* ** * *
51535 TTTATTTCAATCAATCC-GAGGTGATCTTTTCTGCAG
1 TTTATTTCAGTTGATCCAG-GGTGATCTTTTCTTCAA
51571 TTTATTTCAGTTGA
1 TTTATTTCAGTTGA
51585 CCGAAAAATT
Statistics
Matches: 280, Mismatches: 51, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
35 31 0.11
36 147 0.52
37 46 0.16
38 3 0.01
39 21 0.08
40 19 0.07
41 13 0.05
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (36 bp):
TTTATTTCAGTTGATCCAGGGTGATCTTTTCTTCAA
Found at i:51457 original size:111 final size:112
Alignment explanation
Indices: 51200--51545 Score: 450
Period size: 111 Copynumber: 3.1 Consensus size: 112
51190 AGTTAATCCA
* * * * * ** * * *
51200 AGTTTATTTCAAGTTGATCCAGGGCGATCCTTTCTTTGGTTTATTTGCAGTTGATCCAGAGCGAT
1 AGTTTATTTCAATTTGACCCAGGGTGGTCC-TTGTTCAGTTTATTT-CAATTGATCCAGGGTGAT
* *
51265 CTTTTCTTCAATTTATTGTAGTTGATCTAGGGCGATCTTTTTCTTCATC
64 CTTTTCTTCAATTTATTGCAGTTGATCCAGGGCGATCTTTTTCTTCATC
* *
51314 AGTTTATTTCGATTTGACCCAGGGTGGTCCTTGTTCAGTTTATTTCAATTGAGCCAGGGTGATCT
1 AGTTTATTTCAATTTGACCCAGGGTGGTCCTTGTTCAGTTTATTTCAATTGATCCAGGGTGATCT
51379 TTTCTTCAATTTATTGCAGTTGATCCAGGGCGAT-TTTTTCTTCATC
66 TTTCTTCAATTTATTGCAGTTGATCCAGGGCGATCTTTTTCTTCATC
*
51425 AGTTTATTTCAATTTGACCCAGGGTGGTCCTTGTTCAATTTATTTCAATTGATCCAGGGTGATCT
1 AGTTTATTTCAATTTGACCCAGGGTGGTCCTTGTTCAGTTTATTTCAATTGATCCAGGGTGATCT
** * * * *
51490 TTTCTTCAATTTATTTTAATGGATCCAGGGTGGTC-TTTTC-T--TC
66 TTTCTTCAATTTATTGCAGTTGATCCAGGGCGATCTTTTTCTTCATC
51533 AGTTTATTTCAAT
1 AGTTTATTTCAAT
51546 CAATCCGAGG
Statistics
Matches: 208, Mismatches: 23, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
108 15 0.07
110 1 0.00
111 107 0.51
112 48 0.23
113 12 0.06
114 25 0.12
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (112 bp):
AGTTTATTTCAATTTGACCCAGGGTGGTCCTTGTTCAGTTTATTTCAATTGATCCAGGGTGATCT
TTTCTTCAATTTATTGCAGTTGATCCAGGGCGATCTTTTTCTTCATC
Found at i:51874 original size:30 final size:30
Alignment explanation
Indices: 51838--52289 Score: 764
Period size: 30 Copynumber: 15.0 Consensus size: 30
51828 TGCTTCATAA
51838 CTTTATTTTAATCCTGGTTT-AGGATCATTG
1 CTTTATTTTAATCCT-GTTTGAGGATCATTG
51868 CTTTATTTTTAATCCTGTTTGAGGATCATTG
1 CTTTA-TTTTAATCCTGTTTGAGGATCATTG
51899 CTTTATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
*
51929 CTTTATTTTAATCCTATTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
* *
51959 CTTTATTTTAATCCTGATCGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
*
51989 CTTCATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
52019 CTTTATTTTTAATCCTGTTTGAGGATCATTG
1 CTTTA-TTTTAATCCTGTTTGAGGATCATTG
52050 CTTTATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
*
52080 CTTCATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
52110 CTTTATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
52140 CTTTATTTTAATCCTGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
* *
52170 CTTCATTTTAATCATGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
*
52200 CTTTATTTTAATCCTGGTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
* *
52230 CTTCATTTTAATCATGTTTGAGGATCATTG
1 CTTTATTTTAATCCTGTTTGAGGATCATTG
52260 CTTTATTTTAATCCTGGTTT-AGGATCATTG
1 CTTTATTTTAATCCT-GTTTGAGGATCATTG
52290 TTTCATCAGT
Statistics
Matches: 398, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
30 339 0.85
31 59 0.15
ACGTcount: A:0.21, C:0.14, G:0.17, T:0.49
Consensus pattern (30 bp):
CTTTATTTTAATCCTGTTTGAGGATCATTG
Found at i:54059 original size:21 final size:22
Alignment explanation
Indices: 54035--54075 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
54025 AAATTAAATG
54035 CAATTTGACCCCTG-TTTTATT
1 CAATTTGACCCCTGATTTTATT
54056 CAATTTGACCCCTGATTTTA
1 CAATTTGACCCCTGATTTTA
54076 GAAATTATGC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (22 bp):
CAATTTGACCCCTGATTTTATT
Found at i:54081 original size:21 final size:21
Alignment explanation
Indices: 54036--54081 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
54026 AATTAAATGC
**
54036 AATTTGACCCCTGTTTTATTC
1 AATTTGACCCCTGTTTTATGA
54057 AATTTGACCCCTGATTTTA-GA
1 AATTTGACCCCTG-TTTTATGA
54078 AATT
1 AATT
54082 ATGCTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.43
Consensus pattern (21 bp):
AATTTGACCCCTGTTTTATGA
Done.