Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014673.1 Corchorus olitorius cultivar O-4 contig14706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11352
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32


Found at i:1029 original size:16 final size:17

Alignment explanation


    Indices: 1008--1039  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

        998 GAAATTGCGT

                             
       1008 TTTATTTTTCT-TTTTC
          1 TTTATTTTTCTATTTTC

                            
       1024 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

       1040 AATTTGCACT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.09, C:0.09, G:0.00, T:0.81


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC

Found at i:8039 original size:26 final size:26

Alignment explanation


    Indices: 8010--8087  Score: 156
    Period size: 26  Copynumber: 3.0  Consensus size: 26

       8000 TGTTTTGGAT

                                      
       8010 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

                                      
       8036 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

                                      
       8062 TGTTTTTGATTGATCATATATTATTC
          1 TGTTTTTGATTGATCATATATTATTC

       8088 CCCAATTTTT


Statistics
Matches: 52,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   52  1.00

ACGTcount: A:0.23, C:0.08, G:0.12, T:0.58


Consensus pattern (26 bp):   
TGTTTTTGATTGATCATATATTATTC

Done.