Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014681.1 Corchorus olitorius cultivar O-4 contig14714, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62643

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
850--897
6
7.7
6
80
15
53
79
14
2
4
0.98
842--897
20
2.8
19
81
13
60
78
16
1
3
0.97
11190--11248
17
3.6
17
76
15
52
44
1
0
54
1.10
11475--11518
20
2.2
20
100
0
88
29
4
34
31
1.78
13926--13979
22
2.3
24
81
12
60
24
22
5
48
1.72
19336--19606
28
8.8
28
77
19
224
32
15
16
35
1.90
19336--19606
62
4.3
62
91
4
406
32
15
16
35
1.90
19966--20019
22
2.3
24
81
12
60
24
22
5
48
1.72
21700--21947
124
2.0
124
96
0
460
33
15
16
33
1.91
30441--30483
19
2.2
20
80
19
56
13
11
0
74
1.07
30588--30647
24
2.6
23
84
5
77
6
40
41
11
1.68
30555--30626
12
5.9
12
71
19
51
9
37
40
12
1.76
40081--40115
17
2.1
17
94
0
61
5
5
31
57
1.46
40999--41089
47
1.9
47
84
4
121
25
9
17
47
1.78
42353--42426
30
2.6
29
72
18
73
40
5
6
47
1.53
43123--43198
32
2.4
32
78
8
91
23
22
25
28
1.99
46141--46287
60
2.5
60
87
1
215
35
21
18
24
1.96
55355--55630
136
2.0
136
90
0
435
17
18
31
32
1.94
55640--55674
16
2.2
16
89
0
52
2
8
40
48
1.49
58865--58979
57
2.0
57
100
0
230
42
12
27
17
1.85
62036--62074
19
2.1
19
100
0
78
64
5
20
10
1.44

Tables:   1

The End!