Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014682.1 Corchorus olitorius cultivar O-4 contig14715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86411

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9757--9813
5
11.0
5
77
7
60
0
35
56
8
1.31
9764--9813
21
2.4
21
93
0
82
0
36
54
10
1.34
12533--12608
38
2.0
39
84
2
100
38
10
14
36
1.81
17911--17953
10
4.0
10
77
16
50
83
2
11
2
0.83
17906--17958
23
2.3
23
90
3
81
77
1
16
3
1.01
20075--20113
19
2.1
19
95
0
69
23
17
30
28
1.97
23075--23099
10
2.5
10
100
0
50
16
0
52
32
1.44
23945--24020
31
2.5
31
84
0
98
27
28
22
21
1.99
24015--24078
26
2.5
25
85
5
101
39
26
12
21
1.89
24614--24688
29
2.5
30
80
6
89
44
9
29
17
1.80
24989--25051
31
2.0
31
90
6
101
19
25
30
25
1.98
26775--26828
27
2.0
28
82
10
67
33
1
5
59
1.31
28349--28383
14
2.5
14
90
0
61
20
8
14
57
1.63
28586--28658
33
2.2
33
90
0
110
31
5
19
43
1.73
28748--28885
43
3.1
43
76
11
143
31
23
16
28
1.96
28731--28868
47
3.0
46
76
13
149
32
21
15
29
1.95
28825--28941
54
2.2
54
80
10
132
29
18
18
33
1.95
28856--29028
88
2.0
87
85
3
231
30
20
18
31
1.96
28980--29366
54
7.2
54
89
2
555
36
21
13
28
1.92
29477--29968
37
13.2
37
77
2
486
42
14
18
24
1.87
29463--29996
74
7.2
74
88
1
755
42
13
18
25
1.87
29463--29991
223
2.4
222
88
1
790
42
13
18
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36638--36669
3
10.7
3
100
0
64
34
0
0
65
0.93
36995--37812
442
1.8
441
84
6
1118
30
14
12
41
1.83
38554--38648
45
2.2
43
86
5
129
37
21
6
34
1.79
45499--45555
27
2.1
27
90
0
87
33
3
40
22
1.71
45532--45566
18
1.9
18
88
0
52
40
2
40
17
1.64
48867--48905
14
2.8
14
81
11
53
43
5
38
12
1.65
51281--51372
45
2.1
44
87
6
132
38
21
4
35
1.74
53738--53780
15
2.9
15
80
16
54
37
0
0
62
0.95
53752--53821
32
2.1
32
84
10
88
42
0
1
55
1.08
53732--53811
24
3.3
24
74
11
83
40
0
1
58
1.06
77013--77140
45
2.8
45
93
0
211
38
22
6
32
1.79
78857--79073
22
9.8
22
76
6
125
41
9
13
35
1.78
78906--79071
88
1.9
87
82
3
208
43
9
12
34
1.74
79152--79725
22
26.3
22
71
8
246
39
9
16
34
1.81
81214--81245
3
10.7
3
100
0
64
34
0
31
34
1.58
83920--83949
2
15.0
2
100
0
60
50
0
0
50
1.00
86379--86411
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!