genome.fa.s14683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014683.1 Corchorus olitorius cultivar O-4 contig14716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77866

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6233--6372	60	2.3	60	86	0	190	35	17	19	27	1.94
7815--7897	22	3.8	21	73	17	64	57	1	2	38	1.19
7817--7865	25	2.0	25	84	8	64	59	0	0	40	0.98
9562--9594	2	16.5	2	87	12	50	45	0	3	51	1.16
9554--9595	18	2.4	18	96	4	77	42	0	4	52	1.22
11818--11872	27	2.0	27	89	0	83	21	16	29	32	1.95
15183--15674	75	6.6	75	93	1	702	19	25	4	50	1.66
19532--19586	17	3.2	16	80	15	58	70	3	12	12	1.28
27900--28092	100	1.9	100	96	0	359	30	18	18	32	1.95
30478--30896	30	13.7	30	87	3	541	32	18	17	31	1.95
32782--32838	26	2.2	26	90	0	87	31	14	19	35	1.91
32790--32838	14	3.6	14	75	10	57	32	12	20	34	1.90
36331--36495	22	7.6	22	76	8	142	50	1	23	24	1.59
36385--36569	68	2.7	69	88	5	270	54	2	23	18	1.56
36578--36769	38	5.6	34	72	21	118	51	3	19	26	1.63
36546--36754	32	6.1	36	74	16	115	51	3	19	25	1.64
36612--36672	29	2.1	30	84	3	79	50	1	21	26	1.58
36552--36711	66	2.4	68	85	4	216	51	3	18	26	1.60
36642--36744	35	2.9	35	74	16	102	53	2	16	27	1.57
39153--39300	77	1.9	77	87	5	219	47	1	13	37	1.51
39160--39319	77	2.1	77	84	6	209	48	2	13	35	1.56
39560--39603	24	1.9	24	81	9	56	50	6	9	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39578--39630	26	2.0	26	88	3	79	54	7	5	32	1.52
40439--41413	438	2.2	436	86	2	1314	42	17	13	26	1.86
43177--43210	2	17.0	2	88	11	52	47	0	2	50	1.16
46277--46319	15	2.9	15	80	13	61	62	0	4	32	1.15
46359--46391	13	2.5	13	95	0	57	63	0	3	33	1.10
55175--55209	18	1.9	18	88	0	52	48	11	5	34	1.63
57053--57077	9	2.8	9	100	0	50	24	8	20	48	1.76
66024--66071	11	4.7	11	78	21	52	39	6	20	33	1.78
71551--71590	21	1.9	21	84	0	53	22	20	45	12	1.84
74051--74086	18	1.9	18	88	5	54	38	2	22	36	1.69

Tables:   1

The End!