genome.fa.s14688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014688.1 Corchorus olitorius cultivar O-4 contig14721, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136879

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399--906	255	2.0	253	94	0	899	35	17	20	26	1.95
1387--1434	3	16.0	3	100	0	96	66	0	0	33	0.92
16351--16401	24	2.1	25	96	3	95	41	29	13	15	1.86
18980--19204	102	2.2	105	90	4	350	43	10	8	37	1.70
37077--37288	106	2.0	106	96	0	388	21	7	24	47	1.76
37275--37506	115	2.0	116	95	0	421	29	10	22	37	1.88
37519--37544	2	13.0	2	100	0	52	50	0	0	50	1.00
40489--40595	33	3.4	33	72	17	127	18	14	35	30	1.92
40472--40592	61	2.0	61	100	0	242	18	16	33	31	1.93
40472--40565	28	3.1	30	69	19	95	18	19	31	30	1.95
40633--40708	29	2.6	29	81	8	91	40	15	23	19	1.90
40797--40897	31	3.1	32	76	11	98	34	24	22	17	1.96
46637--46680	19	2.3	19	80	4	52	43	9	6	40	1.63
46686--47063	188	2.0	188	96	0	702	29	25	11	33	1.91
47374--47411	18	2.1	18	85	9	51	28	26	26	18	1.98
81595--81930	181	1.9	180	94	1	602	27	18	16	37	1.92
82545--82583	19	2.0	20	85	5	53	38	2	7	51	1.44
83089--83127	18	2.2	18	90	0	60	28	48	5	17	1.68
83244--83392	75	2.0	74	94	1	262	30	34	10	24	1.90
83748--83855	53	2.0	53	98	0	207	37	11	15	36	1.83
86371--87337	317	3.0	317	78	9	1038	33	14	17	35	1.90
86809--87905	552	2.0	548	83	5	1386	32	14	17	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88582--89386	321	2.5	323	82	5	917	33	14	16	35	1.89
89829--89939	54	2.1	54	100	0	222	39	15	12	32	1.85
101820--101845	10	2.6	10	100	0	52	26	7	11	53	1.63
102508--102545	20	1.9	19	94	5	67	2	13	26	57	1.49
108708--108741	14	2.4	14	95	0	59	76	14	8	0	1.01
109021--109068	21	2.2	21	85	3	60	14	0	27	58	1.37
116278--116345	33	2.1	33	100	0	136	50	11	23	14	1.76
118217--118290	31	2.5	30	80	8	80	40	13	25	20	1.89
122221--122265	6	7.7	6	85	5	65	35	11	0	53	1.37
122221--122266	12	3.9	12	94	2	76	34	10	0	54	1.36
126904--128487	322	4.9	320	81	7	1720	33	14	16	35	1.89
129084--129269	101	1.8	101	84	6	252	32	12	15	39	1.84
129288--132840	657	5.4	655	81	6	3888	34	14	15	35	1.88
129288--131557	325	7.0	320	80	7	2193	34	14	16	35	1.89
133573--135300	325	5.3	322	81	6	1812	32	15	16	35	1.90
133574--135300	647	2.7	636	81	7	1831	32	15	16	35	1.90
134694--135904	609	2.0	603	85	4	1623	33	15	16	35	1.90
135306--136506	320	3.7	317	81	7	1306	32	13	17	36	1.89

Tables:   1

The End!