genome.fa.s14691.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014691.1 Corchorus olitorius cultivar O-4 contig14724, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114819

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--110	31	3.6	30	85	3	139	42	10	15	32	1.80
240--306	31	2.2	31	89	5	102	20	16	11	50	1.76
7059--7126	31	2.2	31	97	0	127	33	2	16	47	1.62
29450--29490	20	2.0	20	86	9	57	58	17	4	19	1.56
30551--30647	51	1.9	51	93	0	167	27	15	26	29	1.96
43771--43854	32	2.6	32	90	0	123	29	22	22	25	1.99
43908--43986	29	2.6	30	78	4	97	48	15	20	16	1.82
65518--65543	2	13.0	2	100	0	52	50	0	0	50	1.00
81895--82053	81	2.0	81	91	0	255	27	14	23	33	1.94
82058--82290	120	1.9	120	89	1	360	29	22	13	35	1.92
92159--92240	41	2.0	41	100	0	164	24	26	24	24	2.00
93091--93124	17	2.0	17	100	0	68	29	11	23	35	1.90
95447--95629	91	2.0	91	98	0	357	20	29	6	43	1.77
97627--97678	25	2.1	25	100	0	104	38	0	11	50	1.39
99280--99322	22	2.0	21	86	4	59	18	4	4	72	1.20
99286--99328	21	2.0	22	81	4	52	20	4	4	69	1.25
99937--99976	2	20.5	2	94	5	73	50	0	0	50	1.00
102732--102800	3	23.0	3	96	0	129	0	34	0	65	0.93
107031--107566	52	10.4	52	92	4	849	35	16	19	28	1.94
107586--107999	229	1.8	224	90	3	668	32	15	19	32	1.93
108204--108483	52	5.4	52	93	3	458	35	15	20	29	1.93
108204--108483	105	2.7	104	93	3	467	35	15	20	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109821--109894	35	2.1	35	97	0	139	29	14	16	39	1.88
111084--111113	15	2.0	15	93	0	51	13	13	10	63	1.52
112689--114437	324	5.4	320	79	8	1788	33	13	16	35	1.89
112689--114440	635	2.7	637	88	5	2457	33	13	16	35	1.89
114298--114609	156	2.0	153	89	4	475	39	8	13	37	1.77

Tables:   1

The End!