Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014692.1 Corchorus olitorius cultivar O-4 contig14725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33942

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--1545
329
4.7
328
79
8
1415
33
14
17
35
1.90
1629--2065
224
2.0
221
83
5
547
32
13
14
39
1.85
1328--2385
543
1.9
545
80
6
1196
33
14
14
37
1.87
3197--4627
322
4.5
319
79
8
1351
32
14
16
36
1.89
5851--5938
40
2.2
40
89
0
131
29
18
15
36
1.92
6785--7185
62
6.5
62
98
1
777
34
22
39
3
1.70
7157--7280
34
3.6
34
94
0
221
47
17
31
3
1.64
7393--7424
2
16.0
2
100
0
64
50
0
50
0
1.00
8134--8230
45
2.2
44
87
7
137
29
22
23
23
1.99
12482--12695
71
3.0
71
91
3
358
56
8
21
13
1.65
14263--14289
2
13.5
2
100
0
54
51
0
48
0
1.00
17269--17327
7
8.7
7
90
5
95
0
13
0
86
0.57
17269--17327
20
2.9
20
90
9
93
0
13
0
86
0.57
17326--17351
3
8.7
3
100
0
52
30
0
0
69
0.89
17802--17826
2
12.5
2
100
0
50
48
0
0
52
1.00
26337--26372
2
18.0
2
100
0
72
50
0
0
50
1.00
28473--28812
129
2.7
129
80
3
357
21
25
22
31
1.98

Tables:   1

The End!