Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014695.1 Corchorus olitorius cultivar O-4 contig14728, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107884

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70--2299
320
6.8
321
71
13
1305
32
14
16
36
1.89
1339--1993
330
2.0
331
85
3
899
31
15
18
34
1.92
1760--2314
304
1.8
304
85
3
778
31
14
16
37
1.89
2730--2976
131
1.9
128
90
6
396
37
10
2
49
1.50
9415--11362
321
5.9
330
77
8
1794
35
15
14
33
1.89
9526--11362
666
2.8
651
84
5
2263
35
15
14
34
1.89
11639--12621
528
1.8
531
88
1
1497
35
16
15
32
1.90
14952--14995
8
5.2
8
78
10
52
56
0
18
25
1.41
14952--14995
18
2.6
17
92
7
72
56
0
18
25
1.41
14993--15017
2
12.5
2
100
0
50
52
0
0
48
1.00
45492--45578
26
3.4
26
68
23
76
45
16
29
8
1.75
45467--45575
50
2.1
51
89
3
166
47
16
26
9
1.76
45460--45723
127
2.0
131
91
5
428
46
17
27
9
1.78
60475--60557
41
2.1
41
86
10
120
53
3
2
40
1.32
66476--66533
19
2.9
21
79
10
75
39
10
18
31
1.85
70356--70395
20
1.9
22
90
10
66
57
2
17
22
1.52
72817--72850
16
2.1
16
88
0
50
11
11
29
47
1.76
78408--78483
29
2.6
29
83
6
91
19
17
15
47
1.83
87181--87206
2
13.0
2
100
0
52
50
0
0
50
1.00
97125--97196
29
2.4
29
81
2
90
47
16
15
20
1.83
101298--101380
42
2.0
42
85
4
114
20
24
31
24
1.98
102301--102338
2
19.0
2
100
0
76
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102568--102602
2
17.5
2
93
0
61
48
2
0
48
1.16
103459--103568
31
3.5
31
81
0
139
32
24
23
19
1.97
104000--104045
2
23.5
2
95
4
85
50
0
0
50
1.00
105246--105316
36
2.0
35
97
2
133
56
9
2
30
1.46
106210--106238
6
5.0
6
95
4
51
17
34
31
17
1.93
106223--106280
22
2.7
22
84
12
77
20
27
22
29
1.99

Tables:   1

The End!