Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014703.1 Corchorus olitorius cultivar O-4 contig14736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 13953
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Found at i:2202 original size:21 final size:19
Alignment explanation
Indices: 2176--2233 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
2166 GCTGCAATAA
2176 TAATCTCATATGTACAGTACC
1 TAATCTCATATGTACAGT--C
* * *
2197 TAATCTAATTTGTACAGTG
1 TAATCTCATATGTACAGTC
*
2216 TAATCTCATCTGTACAGT
1 TAATCTCATATGTACAGT
2234 TGCTAAACAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.50
21 16 0.50
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.38
Consensus pattern (19 bp):
TAATCTCATATGTACAGTC
Found at i:7696 original size:2 final size:2
Alignment explanation
Indices: 7689--7716 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7679 ACTCCTTCCA
7689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7717 TCATCTAACC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8751 original size:333 final size:333
Alignment explanation
Indices: 8182--8837 Score: 840
Period size: 333 Copynumber: 2.0 Consensus size: 333
8172 TTTGGCGTTG
* * * *
8182 AATTATATATTTTCTATGAGTATTGTGGCCAAAAATTAAGGAAAAATCTTTCGGTTCACTTTTTG
1 AATTATATATTTTCTATGAGTATTGTGACCAAAAATTAAGGAAAAATCTTTCGGATAACTTTTCG
* * *
8247 CAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGTTAAAAATGCATTTTAGGGCC
66 CAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAATGCA-GTTAGGGAC
* * * * *
8312 CCGACTCAGTTTTGCCTGATTTTTGGCACCAAGACTCCTTCGAATATCTACATTCATCTAACCAA
130 ACGACTCAGATTTGCATGATTTTTGGCACCAAGACTCCGTCAAATATCTACATTCATCTAACCAA
* * *
8377 TTCTCAACCACATTGGATTTAAAGATTTGTTTTTACGGGCATCTGAAT-CATGTTTCAATTTAAT
195 ATATCAACCACATTGGATTTAAAGAATTGTTTTTACGGGCATCTGAATAC-TGTTTCAATTTAAT
* * * *
8441 AAAAAATTAATTCGGAAAAAATAGGAGAAATGATATTAGAAGCGCGAAAAGCCC-TTCAACCTTT
259 AAAAAATCAATTC-GAAAAAA-AGGAAAAACGATAGTAGAAGCGCGAAAA-CCCTTTCAACCTTT
8505 TTTTTTTTCACTC
321 TTTTTTTTCACTC
* * * * * *
8518 AATTATATATTTTTTATGAGTATTGTGACCCAAAATTGAGGAGAAATTTTTCGGATAAGTTTTCG
1 AATTATATATTTTCTATGAGTATTGTGACCAAAAATTAAGGAAAAATCTTTCGGATAACTTTTCG
*
8583 CAAAATTTTAGCCGAAATCGTGTA-TAA-CATTACGGTTTTTGGCTAAAAATGC-GTTACGGGAC
66 CAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAATGCAGTTA-GGGAC
* ** * * *
8645 ACGGCTCAGATTTGCATGATTTTTGGTGCCCAGACTCCGT-AAATTATTTATATTCATCTAACCA
130 ACGACTCAGATTTGCATGATTTTTGGCACCAAGACTCCGTCAAA-TATCTACATTCATCTAACCA
* * *
8709 AATATCAGCCATATTGGATTT-AAGAAATTGTTTTTACGGGCATCTGAATACTGTTTCGATTTAA
194 AATATCAACCACATTGGATTTAAAG-AATTGTTTTTACGGGCATCTGAATACTGTTTCAATTTAA
* * * *
8773 TTAGAAATCAATTCGAAAAAAAGGAAAAACGATAGTAGAAGCGTGAAAACCCTTTCAATCTTTTT
258 TAAAAAATCAATTCGAAAAAAAGGAAAAACGATAGTAGAAGCGCGAAAACCCTTTCAACCTTTTT
8838 GGCGTTGAAT
Statistics
Matches: 276, Mismatches: 39, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
330 3 0.01
331 35 0.13
332 15 0.05
333 117 0.42
334 24 0.09
335 3 0.01
336 79 0.29
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (333 bp):
AATTATATATTTTCTATGAGTATTGTGACCAAAAATTAAGGAAAAATCTTTCGGATAACTTTTCG
CAAAATTTTAGCCGAAATCGTGTACTAATCATCACGGTTTTTGGCTAAAAATGCAGTTAGGGACA
CGACTCAGATTTGCATGATTTTTGGCACCAAGACTCCGTCAAATATCTACATTCATCTAACCAAA
TATCAACCACATTGGATTTAAAGAATTGTTTTTACGGGCATCTGAATACTGTTTCAATTTAATAA
AAAATCAATTCGAAAAAAAGGAAAAACGATAGTAGAAGCGCGAAAACCCTTTCAACCTTTTTTTT
TTTCACTC
Found at i:9988 original size:332 final size:327
Alignment explanation
Indices: 8950--10168 Score: 969
Period size: 332 Copynumber: 3.8 Consensus size: 327
8940 TCGGAGGCAT
* * * * * *
8950 GACTCAGTTTTACATTATTTTTGGCGCCAATACTCCTTCA-AATGTCGATATACATCTAACCAAA
1 GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-AGAATATCTATATTCATCTAACCAAA
* ** * *
9014 TCTCAGCCACATTGGATTTAACAATTTGTTTTTACGAGCATCCGAAT-CATGTTCCGATTTAATC
65 TCTCAACCACATTGGATTTAAGGATTTGTTTTTACG-GCATCTGAATAC-TGTTTCGATTTAAT-
* * * ** * *
9078 AGAAATTATTTC-G-----AAA--AAAAACAATATTAGAAGTGCAAAAAGCCATTCAATCTTTTT
127 -GATATTAATTCAGAAAAAAAAGGAAAAACGATATTAGAAGCACGAAAAGCCCTTCAATCTTTTT
* * * * *
9135 GGC-ATAAAATTATATATTTTTTATGAGTATTGTGGCCAAAAATTGAAGAGAAAATTTTC-AACT
191 GGCGCT-GAATTATATATTTTTTATGAGTATTGTGGCCAGAAATT-AAGA-AAAATCTTCGGA-T
* * * * * *
9198 AAGTTTTTGTAAAATTTTAGCCGAAA-----T-C--AT-GT-ACGGTTTTTG-GTTAAAA-ACGT
252 AAGTTTTTGCAAAATTTTACCCGAAATCGTGTACTAATCATCACAGTTTTTGACTAAAAATACG-
* *
9251 ATTCT-GGGGCCC
316 -TTCTAGGGACAC
* * * * *
9263 CATCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCATTGGAATATCTATATTCATCTGACCAAA
1 GA-CTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAA
* * * * *
9328 TCTCAGCAACATTGGATTTAACGATTTGTTTTTACGAGCATC-GAAAACCAGTTTCGA--T--T-
65 TCTCAACCACATTGGATTTAAGGATTTGTTTTTACG-GCATCTGAATA-CTGTTTCGATTTAATG
* * * **
9387 -TATTAATT-A-AAAAAAAAGGTAAATCGATATTATTAA-CGTGAAAAGCCCTTCAATCTTTTTG
128 ATATTAATTCAGAAAAAAAAGGAAAAACGATATTA-GAAGCACGAAAAGCCCTTCAATCTTTTTG
* * * *
9448 GCGTTGAATTATATATTTTTTATGAGTATTGTGGCCAGAAATTAAGAAAAATCTTCGGGTTATTT
192 GCGCTGAATTATATATTTTTTATGAGTATTGTGGCCAGAAATTAAGAAAAATCTTCGGATAAGTT
* * *
9513 TTTGTAAAATTTTACCCGAAATCGTGTACTAATCATTACAGTTTTTGGCTAAAAATACGTTCTAG
257 TTTGCAAAATTTTACCCGAAATCGTGTACTAATCATCACAGTTTTTGACTAAAAATACGTTCTAG
* *
9578 GGCCCC
322 GGACAC
* * * * *
9584 GACTCAGTTTTGCCTGATTTTTGGCACCAAGACTCCTTCGAATATCTACATTCATCTAACCAATT
1 GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAAT
9649 CTCAACCACATTGGATTTAAGGATTTGTTTTTACTGGCATCTGAATTA-TGTTTCGATTTAATCG
66 CTCAACCACATTGGATTTAAGGATTTGTTTTTAC-GGCATCTGAA-TACTGTTTCGATTTAAT--
* *
9713 GATATTAATTCAGAAAAAAATAGGAAAAACGATATTAGAAGCACGAAAGGCCCTTCAACCTTTTT
127 GATATTAATTCAGAAAAAAA-AGGAAAAACGATATTAGAAGCACGAAAAGCCCTTCAA--TCTTT
** * * * * *
9778 TTTTCGCTGAATTATATATTTTTTATGAGTATTGTGATCCA-AAATTGAGGAGAGATTTTTCGGA
189 TTGGCGCTGAATTATATATTTTTTATGAGTATTGTG-GCCAGAAATT-AAGA-AAAATCTTCGGA
* * * **
9842 TAAGTTTTTGCAAAATTTTAGCCGAAATCTTGTAC-AA-CATCACGGTTTTTGACTAAAAATGTG
251 TAAGTTTTTGCAAAATTTTACCCGAAATCGTGTACTAATCATCACAGTTTTTGACTAAAAATACG
9905 TTAC-A-GGACAC
316 TT-CTAGGGACAC
* * * *
9916 GGCTCAGATTTGCATGATTTTTGGCGCCCAGACTCCTTAAAATATCTATATTCATCTAACCAAAT
1 GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAAT
* * * * * *
9981 ATCAACCATATTGGATTTAAGGAATTGTTTTTACAAGCAACTGAATATTGTTTCGATTTAATTAG
66 CTCAACCACATTGGATTTAAGGATTTGTTTTTAC-GGCATCTGAATACTGTTTCGATTTAA-T-G
* * ** *
10046 AAATTAATTC-G-AAAAAAAGGAAAAACGATAGTAGAAGCGTGAAAA-CCTTTCAATCTTTTTGG
128 ATATTAATTCAGAAAAAAAAGGAAAAACGATATTAGAAGCACGAAAAGCCCTTCAATCTTTTTGG
* * ** * * * * *
10108 CGTTGAATTATAGATTTTCAATGACTATTTTGGCCAAAAATTGAGGAAAACTCTTTCGGAT
193 CGCTGAATTATATATTTTTTATGAGTATTGTGGCCAGAAATT-AAGAAAAATC-TTCGGAT
10169 CAATTTGTGC
Statistics
Matches: 736, Mismatches: 117, Indels: 93
0.78 0.12 0.10
Matches are distributed among these distances:
306 6 0.01
310 36 0.05
311 4 0.01
312 70 0.10
313 7 0.01
314 97 0.13
315 2 0.00
316 1 0.00
318 2 0.00
319 1 0.00
320 111 0.15
321 16 0.02
322 5 0.01
324 1 0.00
325 6 0.01
326 49 0.07
328 15 0.02
329 25 0.03
330 15 0.02
331 31 0.04
332 122 0.17
333 67 0.09
334 9 0.01
335 38 0.05
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (327 bp):
GACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAAT
CTCAACCACATTGGATTTAAGGATTTGTTTTTACGGCATCTGAATACTGTTTCGATTTAATGATA
TTAATTCAGAAAAAAAAGGAAAAACGATATTAGAAGCACGAAAAGCCCTTCAATCTTTTTGGCGC
TGAATTATATATTTTTTATGAGTATTGTGGCCAGAAATTAAGAAAAATCTTCGGATAAGTTTTTG
CAAAATTTTACCCGAAATCGTGTACTAATCATCACAGTTTTTGACTAAAAATACGTTCTAGGGAC
AC
Found at i:10900 original size:321 final size:318
Alignment explanation
Indices: 10180--11766 Score: 1307
Period size: 321 Copynumber: 4.9 Consensus size: 318
10170 AATTTGTGCA
* * * * *
10180 ATCACGGTTTTTGGCTAAATACGCATT-TCGGAGGCCTGACTCAGTTTTACATTATTTTTGGCGC
1 ATCACGGTTTTTGGCTAAAAACGCGTTCT-GG-GGCC-CACTCAGTTTTGCATGATTTTTGGCGC
* ** *
10244 CAAGACTCCTTCAAATGTCTATACACATCTAACCAAATCTCAGCCACATTGGATTTAACAATT-T
63 CAAGACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTGT
*
10308 TTTTACGAGCAT-TCGAATCATGTTTCGATTTAATCAGAAACTAATTCGAAAAAAAAAGAAAAAA
128 TTTTACGAGCATCT-GAATCATGTTTCGATTTAATCAGAAATTAATTC---------AG-AAAAA
* * * *
10372 ACGATATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCCTTGAATT-TGTATATTTTGTAAGA
182 ATGATATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGG-GTTGAATTATATA-ATTTT-TATGA
* * * * * * * *
10436 ATATTGTGG-AAAGAAATTCAGCAAAAATCTTTCAGTTCAT-TTTTTGTAAAATTTTAGCTGAAA
244 GTATTGTGGCCAA-AAATTGAGGAAAAATTTTTCAATT-ATGTTTTTGCAAAATTTTAGCCGAAA
* *
10499 TCATTTACT---
307 TCGTGTACTAAC
* * * * * * *****
10508 ATCACGATTTTTGGCTAAAAACGCGTTCCGGATGCCCGACTCAGTATTACATGATTAAATCAAAA
1 ATCACGGTTTTTGGCTAAAAACGCGTTCTGG-GGCCC-ACTCAGTTTTGCATGATT--TTTGGCG
* * *
10573 CCAAGACTCCTT-AAAAATCTATATTCATCTAACCAAATCCCAGCCACATTAGATTTAAGAATTC
62 CCAAGACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATT-
* * *
10637 GTTTTTACGGGCATCTGAATCATGTTTCAATTTAATCGGAAATTAATTCAGAAAAAATGATATTA
126 GTTTTTACGAGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTCAGAAAAAATGATATTA
* *
10702 GATGCGCGAAAAGCCATTCAATCTTTTTGGGATTGAATTATATAATTTTTATGAGTATTGTGGCC
191 GAAGCGCGAAAAGCCCTTCAATCTTTTTGGG-TTGAATTATATAATTTTTATGAGTATTGTGGCC
* * *
10767 AAAAATTGAGGAGAAATTTTTCAATTCTGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACC
255 AAAAATTGAGGAAAAATTTTTCAATTATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAA-C
* *
10832 ATCACGGTTTTTGGTTAAAAACGCGTTCTGGGGCCCATCTCAGTTTTGCATGATTTTTGGTGCCA
1 ATCACGGTTTTTGGCTAAAAACGCGTTCTGGGGCCCA-CTCAGTTTTGCATGATTTTTGGCGCCA
* ** * * * * * *
10897 AGACTCATTGGAATATATATATTAATCTGACCAAATGTCAGCAACATTGGATTTAACGATTTGTT
65 AGACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAA-GAATTGTT
* ** * * * * * **
10962 TTTACGAGCATCGGGAA-CCGGTTTCGATTTATTAATTAAA-AAAAT-AG-GGAAATCGATATTA
129 TTTACGAGCATC-TGAATCATGTTTCGATTTAATCA-GAAATTAATTCAGAAAAAAT-GATATTA
* * * *
11023 TTAA-CGTGAAAAGCCCTTCAATCTTTTTGGCGGTGAATTATAT-ATTATCTATGAGTATTGTGG
191 -GAAGCGCGAAAAGCCCTTCAATCTTTTTGG-GTTGAATTATATAATT-TTTATGAGTATTGTGG
* * *** * *
11086 CCAGAAATTAAGGAAAAATCTTTTGGGTAATTTTTTTGCAAAATTTTAGCCGAAATCGTGTACAT
253 CCAAAAATTGAGGAAAAAT-TTTTCAATTATGTTTTTGCAAAATTTTAGCCGAAATCGTGTAC-T
*
11151 TAC
316 AAC
* * * * * * *
11154 ATCACAGTTTTTGGCTAAAAATGCTTTCCAGGGCCCCAACTCAGTTTTGCCTGATTTTTGGCACC
1 ATCACGGTTTTTGGCTAAAAACGCGTT-CTGGGGCCC-ACTCAGTTTTGCATGATTTTTGGCGCC
* * * * *
11219 AACACTCCTTCGAATATCTACATTCATCTAACCAATTCTCAGCCACATTGGATTTAAGGATTTGT
64 AAGACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAA-GAATTGT
* *
11284 TTTTACGGGCATTTGAA-CAATGTTTCGATTTAATCAGAAATTAATTCAGAAAAAATAGGAAAAA
128 TTTTACGAGCATCTGAATC-ATGTTTCGATTTAATCAGAAATTAATTCAGAAAAAAT--------
* * ** *
11348 CGATATTAGAAGCGAGAAAAGCCCTTCAACCCTTTTTTTTTCGCTGAATTATAT-ATCTTTTATG
184 -GATATTAGAAGCGCGAAAAGCCCTTCAA----TCTTTTTGGGTTGAATTATATAAT-TTTTATG
* * * ** *
11412 AGTATTTTGTGACCCAAAATTGAGGAGAAATTTTTTGGA-TAAGTTTTTGCAAAATTTTAGCCGA
243 AGTA--TTGTGGCCAAAAATTGAGGA-AAAATTTTTCAATTATGTTTTTGCAAAATTTTAGCCGA
11476 AATCGTGTAC-AAC
305 AATCGTGTACTAAC
* * * * *
11489 ATCACGATTTTTGGCTAAAAATGCGTTAC-GGGACACGACTCAGATTTGCATGATTTTTGGCGCC
1 ATCACGGTTTTTGGCTAAAAACGCGTT-CTGGGGC-CCACTCAGTTTTGCATGATTTTTGGCGCC
* * * * * * *
11553 CAGACTCCTTAAAATATCTATATTCATCTAACCAAATATCGGTCATATTGGATTTGAGAAATTGT
64 AAGACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAG-AATTGT
* *
11618 TTTTACGAGCATCTGAAT-ATTGTTTCGATTTAAGT-AGAAATTAATTC-GAAAAAACGATAGTA
128 TTTTACGAGCATCTGAATCA-TGTTTCGATTTAA-TCAGAAATTAATTCAGAAAAAATGATATTA
* * * * *
11680 AAAGCGTGAAAA-CCCTTTCAATCTTTTTGGCGTTGAATTATAGAATTTTTATGACTATTTTGGC
191 GAAGCGCGAAAAGCCC-TTCAATCTTTTTGG-GTTGAATTATATAATTTTTATGAGTATTGTGGC
*
11744 CAAAAATTGAGGAAAAATCTTTC
254 CAAAAATTGAGGAAAAATTTTTC
11767 GGGTCAATTT
Statistics
Matches: 1019, Mismatches: 183, Indels: 124
0.77 0.14 0.09
Matches are distributed among these distances:
318 7 0.01
319 18 0.02
320 73 0.07
321 161 0.16
322 143 0.14
323 145 0.14
324 52 0.05
325 4 0.00
328 46 0.05
329 44 0.04
330 13 0.01
331 42 0.04
332 3 0.00
333 33 0.03
334 119 0.12
335 29 0.03
336 22 0.02
337 39 0.04
338 22 0.02
339 4 0.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (318 bp):
ATCACGGTTTTTGGCTAAAAACGCGTTCTGGGGCCCACTCAGTTTTGCATGATTTTTGGCGCCAA
GACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGAATTGTTTT
TACGAGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTCAGAAAAAATGATATTAGAAGC
GCGAAAAGCCCTTCAATCTTTTTGGGTTGAATTATATAATTTTTATGAGTATTGTGGCCAAAAAT
TGAGGAAAAATTTTTCAATTATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAAC
Found at i:11313 original size:323 final size:319
Alignment explanation
Indices: 10218--13886 Score: 1404
Period size: 323 Copynumber: 11.3 Consensus size: 319
10208 CGGAGGCCTG
* * * **
10218 ACTCAGTTTTACATTATTTTTGGCGCCAAGACTCCTTCA-AATGTCTATACACATCTAACCAAAT
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-AGAATATCTATATTCATCTAACCAAAT
* * *
10282 CTCAGCCACATTGGATTTAA-CAATT-TTTTTACGAGCAT-TCGAATC-ATGTTTCGATTTAATC
65 ATCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT-GAA-CAATGTTTCGATTT-AT-
* * * * *
10343 AGAAACTAATTCGAAAAAAAAAGAAAAAAACGATATTAGAAGCGCGAAAAGCCCTTCAATCTTTT
126 ------TAATTAG-AAAAAATAG-GAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTT
* * * * * * * ** *
10408 TGGCCTTGAATTTGTATATTTTGTAAGAATATTGTGG-AAAGAAATTCAGCAAAAATCTTTCAGT
183 TGGCGTTGAA-TTATATATTTT-TATGAGTATTGTGGCCAA-AAATTGAGGAAAAATCTTTTGGA
* * * * * *
10472 TCAT-TTTTTGTAAAATTTTAGCTGAAATCATTTAC-T--ATCACGATTTTTGGCTAAAAACGCG
245 TAATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACATACATCACG-TTTTTGGCTAAAAATGCG
* *
10533 TTCCGGATGCCCG
309 TTCGGGA--CCCA
* * * ***** *
10546 ACTCAGTATTACATGATTAAATCAAAACCAAGACTCCTTA-AAAATCTATATTCATCTAACCAAA
1 ACTCAGTTTTGCATGATT--TTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAA
** * * * * *
10610 TCCCAGCCACATTAGATTTAAGAATTCGTTTTTACGGGCATCTGAATC-ATGTTTC-A-AT-TTA
64 TATCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA-CAATGTTTCGATTTATTA
** * * * * * * *
10671 ATCGGAAATTAATTCAGAAAAAATGATATTAGATGCGCGAAAAGCCATTCAATCTTTTTGG-GAT
128 ATTAGAAA--AAAT-AGGAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCG-T
* ** **
10735 TGAATTATATAATTTTTATGAGTATTGTGGCCAAAAATTGAGGAGAAAT-TTTTCAATTCTGTTT
189 TGAATTATAT-ATTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGATAATGTTT
* * *
10799 TTGTAAAATTTTAGCCGAAATCGTGTAC-TAACCATCACGGTTTTTGGTTAAAAACGCGTTCTGG
253 TTGCAAAATTTTAGCCGAAATCGTGTACAT-A-CATCAC-GTTTTTGGCTAAAAATGCGTTC-GG
*
10863 GGCCCA
314 GACCCA
* * * * * * * *
10869 TCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCATTGGAATATATATATTAATCTGACCAAATG
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
* * * **
10934 TCAGCAACATTGGATTTAACGATTTGTTTTTACGAGCATCGGGAAC-CGGTTTCGATTTATTAAT
66 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATC-TGAACAATGTTTCGATTTATTAAT
* * * *
10998 TA-AAAAAATAGGGAAATCGATATTATTAA-CGTGAAAAGCCCTTCAATCTTTTTGGCGGTGAAT
130 TAGAAAAAATAGGAAAAACGATATTA-AAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAAT
* * * * *
11061 TATATATTATCTATGAGTATTGTGGCCAGAAATTAAGGAAAAATCTTTTGGGTAATTTTTTTGCA
194 TATATATT-TTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGATAATGTTTTTGCA
* *
11126 AAATTTTAGCCGAAATCGTGTACATTACATCACAGTTTTTGGCTAAAAATGCTTTCCAGGGCCCC
258 AAATTTTAGCCGAAATCGTGTACA-TACATCAC-GTTTTTGGCTAAAAATGCGTT-C-GGGACCC
11191 A
319 A
* * * * * * *
11192 ACTCAGTTTTGCCTGATTTTTGGCACCAACACTCCTTCGAATATCTACATTCATCTAACCAATTC
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
* *
11257 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGGGCATTTGAACAATGTTTCGATTTAATCAGA
66 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAACAATGTTTCGA-TT--T----
* * *
11322 AATTAATTCAGAAAAAATAGGAAAAACGATATTAGAAGCGAGAAAAGCCCTTCAACCCTTTTTTT
124 -ATTAATT-AGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAA---TCTTTTT
** * * * * *
11387 TTCGCTGAATTATATATCTTTTATGAGTATTTTGTGACCCAAAATTGAGGAGAAATTTTTTGGAT
184 GGCGTTGAATTATATAT-TTTTATGAGTA--TTGTGGCCAAAAATTGAGGAAAAATCTTTTGGAT
11452 AA-GTTTTTGCAAAATTTTAGCCGAAATCGTGTACA-ACATCACGATTTTTGGCTAAAAATGCGT
246 AATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACATACATCACG-TTTTTGGCTAAAAATGCGT
* *
11515 TACGGGACACG
310 T-CGGGACCCA
* * *
11526 ACTCAGATTTGCATGATTTTTGGCGCCCAGACTCCTTAAAATATCTATATTCATCTAACCAAATA
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
* * * * * * * * *
11591 TCGGTCATATTGGATTTGAGAAATTGTTTTTACGAGCATCTGAATATTGTTTCGA--T-TTAAGT
66 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAACAATGTTTCGATTTATTAATT
* * * *
11653 AGAAATTAATTCGAAAAAACGATAGTAAAAGCGTGAAAA-CCCTTTCAATCTTTTTGGCGTTGAA
131 AGAAA--AAATAGGAAAAACGATATTAAAAGCGTGAAAAGCCC-TTCAATCTTTTTGGCGTTGAA
* * * * *
11717 TTATAGAATTTTTATGACTATTTTGGCCAAAAATTGAGGAAAAATCTTTCGGGTCAA--TTTTTG
193 TTATA-TATTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGAT-AATGTTTTTG
* * ** * * * **** ****
11780 TAATCACAGTTTTTGGCTAAAAACGCGTTTCGGAGGT-CTGACTCA-GTTTTACATTATTTTTGG
256 CAA--A-A--TTTTAGCCGAAATCGTG-TAC--A--TAC--A-TCACGTTTTTGGCTAAAAAT-G
* ***
11843 CGCT-AATACTCC-
307 CGTTCGGGAC-CCA
* ** * *** **** * * * ** * * *****
11855 -TTCAAATGT-CTAT-ATACATCTAACCAA-A-T-CTCAGCCACAT-TGGATTTA-ATAATTTGT
1 ACTCAGTTTTGC-ATGATTTTTGGCGCCAAGACTCCTTAG-AATATCTATATTCATCTAACCAAA
* * * ** * * * * * * **
11912 TTTTA-CGAGCATCCG-TATAATG-TTTCG-ATTT---A--ATCAG-A-AA---TT-AATTAAAA
64 TATCAGCCA-CATTGGATTTAAGGATTT-GTTTTTACGAGCATCTGAACAATGTTTCGATTTATT
* ** * * ** ** * ** * * * * *
11962 AAATAGAAAAAA-A--AACGA-TAT-TAGAAGCGCG-GAAAGCCCTTCAATCT-TTTTGGCCTTG
127 AATTAGAAAAAATAGGAAAAACGATAT-TAAAAGCGTGAAAAGCCCTTCA-ATCTTTTTGGCGTT
* * * * * * * * *
12020 AATTTATATATTTTTTAAGAGTATTGTGG-AAAGAAATTCAGTAAAAATCTTTCGGTTCAT-TTT
190 GAATTATATA-TTTTTATGAGTATTGTGGCCAA-AAATTGAGGAAAAATCTTTTGGATAATGTTT
* * * * * *
12083 TTGTAAAATTTTAGCTGAAATCATTTGC-T--ATCACGGTTTTTGGCTAAAAACGCGTTCCGGAG
253 TTGCAAAATTTTAGCCGAAATCGTGTACATACATCAC-GTTTTTGGCTAAAAATGCGTT-CGG-G
* ***
12145 TCTTG
315 ACCCA
* * * * * *
12150 ACTCAGTATTACATGATTTTTGGCACCAAGACTCCTTCA-AAAATGTATATTCATCTAACCAAAC
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-AGAATATCTATATTCATCTAACCAAAT
** * *
12214 CCCAGCCACATTGGATTTAAGAATTTGTTTTTACGGGCATCTGAATC-ATGTTTCGA--T-TTAA
65 ATCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA-CAATGTTTCGATTTATTAA
* * * * * * **
12275 -TCGAAAATTAATTCGGAAAAACACGATATTAGAACCGCGAAAAGCCATTCAATCTTTTTGGCAC
129 TTAGAAAA--AA-TAGG-AAAA-ACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGT
* * * * ** *
12339 TGAATTATATATTTTTTATGATTATTCTGG-CTAAAATTGAGGATAAAT-TTTTCAATTCA-GTT
189 TGAATTATATA-TTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGA-TAATGTT
* * *
12401 TTTGTAAAATTTTAGCCGAAATTGTGTAC-TAACCATCACGGTTTTTGGTTAAAAATGCGTTCTG
252 TTTGCAAAATTTTAGCCGAAATCGTGTACAT-A-CATCAC-GTTTTTGGCTAAAAATGCGTTC--
12465 GGGATCCCA
312 GGGA-CCCA
* ** * * * *
12474 TCTCAGTTTTGCATGATTTTTGATGCCAAGACTCATTGGAATATCTATATTCATCTGACCAAATC
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
* * * *
12539 TCAGCAACATTGGATTTAACGATTTGTTTTTACGAGCATC-GGA-AATCAGTTTCGATTTACTAA
66 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAACAAT--GTTTCGATTTATTAA
* * * * * *
12602 TTAAAAAAAATAGGTAAATCGATATTATTAA-CGTGAAAAGCCCTTCAATATTTTTGCCGTTGAA
129 TTAGAAAAAATAGGAAAAACGATATTA-AAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAA
* * * * * * * *
12666 TTATATATTTTTTTATGATTATTGTCGCCAGAAATTAAGGAGAAATCTTTCGGGTAATTTTTTTG
193 TTATATA--TTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGATAATGTTTTTG
* * * * * * * *
12731 TAAAATTTTAGGCAAAATCATGTAC-TAACTATCACAGTTTTTTGATAAAAACGCGTTTCGGAGG
256 CAAAATTTTAGCCGAAATCGTGTACAT-AC-ATCAC-GTTTTTGGCTAAAAATGCG-TTCGG-GA
*
12795 CCCG
316 CCCA
* * * *
12799 ACTCAGTATTACATAAATTTTGGCGCCAAGACTCCTTCA-AATATCTATATTCATCTAACCAAAT
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-AGAATATCTATATTCATCTAACCAAAT
* * ** * * * * *
12863 ATCAGCAACAATGGAAATAAGAATTTGTTTTTCCGGGCTTCTGAATC-ATGTTTCATATTAATCA
65 ATCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAA-CAATGTTTC-GATT--T--
* * * ** * * *
12927 GAAATTAATTCCGAAAAAAATAGAAAAAATGATATTGGAAGCGCGAAAATCCATTCAATCTTTTT
124 ---ATTAATT-AG-AAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTT
* * * * * *
12992 GGTGGTGAATTATATA-TTTTATGACTATTGTGGCCAAAAAATT-AGGAAAAATCTTTCGGGTCA
184 GGCGTTGAATTATATATTTTTATGAGTATTGTGGCC-AAAAATTGAGGAAAAATCTTTTGGATAA
* * * * * * **
13055 T-CTTTTGTAAAATTTTATCTGAAATCGTGTAC-TAATTATCAAGGTTTTTTGGCTAAAAACACG
248 TGTTTTTGCAAAATTTTAGCCGAAATCGTGTACAT-A-CATC-ACG-TTTTTGGCTAAAAATGCG
* *
13118 TTCCGGAGGCCCG
309 TT-CGG-GACCCA
* * * *
13131 ACTCAGTTTTGAATGATTTATGGCGCCAAGACTCCTTCA-AATATCAATATTCATCTAACCATAT
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTT-AGAATATCTATATTCATCTAACCAAAT
* * *
13195 CTCAACCACATTGGATTTAAGGATTTGTTTTTAC-AGACATTTGAATC-ATGTTTCGATTTAAAC
65 ATCAGCCACATTGGATTTAAGGATTTGTTTTTACGAG-CATCTGAA-CAATGTTTCGA-TT----
* * * * * *
13258 ATAAATTAATTCGGGTAAAAA-A--AAAAACGACAATAGAAGC-TCGAAAACCCCTTCAATCTTT
123 -T--ATTAATT--AGAAAAAATAGGAAAAACGATATTAAAAGCGT-GAAAAGCCCTTCAATCTTT
* * * * * *
13319 ATGGCGTTGAATTATATATTTTTTTGAGTATTGTGGCCAGAAATTGAGGAGAAAT-TTTTCAGTT
182 TTGGCGTTGAATTATATATTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTT-GGAT
* * * * *
13383 CA-GATTTTGTAAAATTTTA---G---T--TG---A-A-ATCACGGTTTTTGGTTAAAAACGCGT
246 AATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACATACATCAC-GTTTTTGGCTAAAAATGCGT
13434 TCCGGGA-CCA
310 T-CGGGACCCA
* * ** * * * *
13444 TCTCAGTTTTGCATGATTTTTTGTACCAAGACTCATTGGAATATCTATATTCATCTGACCAAATC
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
* * * * ** *
13509 TCAGCAACATTAGATTTAAGAATTTGTTTTTACGAGCATCAGAA-ACCGGTTTCAATTTAATTAG
66 TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAACA-ATGTTTCGATTT-ATT--
* * * * * * *
13573 AAATTAATTCGGAATAAAATAGGCAAATCGTTATTATAACCGTCAAAAGCCCTTCGATCTTTTTG
127 -AATT-A----GAA-AAAATAGGAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTG
* * * * * * *
13638 ACATTGAATTATATAATTTTGT-TTACATATTTTGGCCAAAAA-TGAAGGAAAAATCTTTCGGGT
185 GCGTTGAATTATAT-ATTTT-TATGA-GTATTGTGGCCAAAAATTG-AGGAAAAATCTTTTGGAT
* **** * * * *
13701 CAA--TTTTTACAAAATTTTATATAAAATTGTGTA-GTAACCATCACGATTTTTAGCTAAAAACG
246 -AATGTTTTTGCAAAATTTTAGCCGAAATCGTGTACAT-A-CATCACG-TTTTTGGCTAAAAATG
* *
13763 CGTTCTAGGGCCCCG
307 CGTTC--GGGACCCA
** * * * * *
13778 ACTCAGTTTTGTTTGATTTTTGGCACTAAAACTCCTT-GAAATATCTATAATCATCTAATCAAAT
1 ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAG-AATATCTATATTCATCTAACCAAAT
* * *
13842 CTAAGGCCA-ATTGGATTTAAGGATTTGTCTTTA-GAAGCATCTGAA
65 ATCA-GCCACATTGGATTTAAGGATTTGTTTTTACG-AGCATCTGAA
13887 TCTTATTTGG
Statistics
Matches: 2502, Mismatches: 612, Indels: 448
0.70 0.17 0.13
Matches are distributed among these distances:
291 3 0.00
292 5 0.00
293 7 0.00
295 2 0.00
296 6 0.00
297 9 0.00
298 1 0.00
299 4 0.00
300 9 0.00
301 20 0.01
302 7 0.00
303 7 0.00
304 1 0.00
305 4 0.00
306 68 0.03
307 11 0.00
308 7 0.00
309 5 0.00
310 8 0.00
311 6 0.00
312 6 0.00
313 110 0.04
314 6 0.00
315 24 0.01
316 49 0.02
317 12 0.00
318 43 0.02
319 95 0.04
320 108 0.04
321 177 0.07
322 149 0.06
323 212 0.08
324 204 0.08
325 129 0.05
326 67 0.03
327 18 0.01
328 30 0.01
329 100 0.04
330 69 0.03
331 76 0.03
332 205 0.08
333 55 0.02
334 194 0.08
335 83 0.03
336 29 0.01
337 33 0.01
338 29 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (319 bp):
ACTCAGTTTTGCATGATTTTTGGCGCCAAGACTCCTTAGAATATCTATATTCATCTAACCAAATA
TCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAACAATGTTTCGATTTATTAATT
AGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTA
TATATTTTTATGAGTATTGTGGCCAAAAATTGAGGAAAAATCTTTTGGATAATGTTTTTGCAAAA
TTTTAGCCGAAATCGTGTACATACATCACGTTTTTGGCTAAAAATGCGTTCGGGACCCA
Found at i:11645 original size:657 final size:644
Alignment explanation
Indices: 10572--11778 Score: 1431
Period size: 657 Copynumber: 1.9 Consensus size: 644
10562 TTAAATCAAA
* *
10572 ACCAAGACTCCTTAAAAATCTATATTCATCTAACCAAATCCCAGCCACATTAGATTTAAGAATTC
1 ACCAACACTCCTTAAAAATCTACATTCATCTAACCAAATCCCAGCCACATTAGATTTAAGAATTC
*
10637 GTTTTTACGGGCATCTGAATCATGTTTCAATTTAATCGGAAATTAATTCAGAAAAAATGATATTA
66 GTTTTTACGGGCATCTGAATCATGTTTCAATTTAATCAGAAATTAATTCAGAAAAAATGATATTA
* * * * *
10702 GATGCGCGAAAAGCCATTCAATCTTTTTGGGATTGAATTATATAATTTTTATGAGTATTGTGGCC
131 GAAGCGAGAAAAGCCATTCAATCTTTTTGCGACTGAATTATATAATTTTTATGAGTATTGTGACC
** *
10767 AAAAATTGAGGAGAAATTTTTCAATTCTGTTTTTGTAAAATTTTAGCCGAAATCGTGTACTAACC
196 AAAAATTGAGGAGAAATTTTTCAATTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
* * * * *
10832 ATCACGGTTTTTGGTTAAAAACGCGTTCTGGGGCCCATCTCAGTTTTGCATGATTTTTGGTGCCA
261 ATCACGATTTTTGGCTAAAAACGCGTTCTGGGACCCATCTCAGATTTGCATGATTTTTGGCGCCA
** * * *
10897 AGACTCATTGGAATATATATATTAATCTGACCAAATGTCAGCAACATTGGATTTAACGATTTGTT
326 AGACTCATTAAAATATATATATTAATCTAACCAAATATCAGCAACATTGGATTTAACGAATTGTT
* * ** * * *
10962 TTTACGAGCATCGGGAACCGGTTTCGATTTATTAATTA-AAA-AAATAGGGAAATCGATATTATT
391 TTTACGAGCATCGGGAAACGGTTTCGA--T-TTAAGTAGAAATAAATAGAAAAAACGATAGTA-A
* *
11025 AA-CGTGAAAAGCCC-TTCAATCTTTTTGGCGGTGAATTATA-TATTATCTATGAGTATTGTGGC
452 AAGCGTGAAAA-CCCTTTCAATCTTTTTGGCGGTGAATTATAGAATT-TCTATGACTATTGTGGC
* *
11087 CAGAAATTAAGGAAAAATCTTTTGGGT-AATTTTTTTGCAAAATTTTAGCCGAAATCGTGTACAT
515 CAAAAATTAAGGAAAAATCTTTCGGGTCAATTTTTTTGCAAAATTTTAGCCGAAATCGTGTACAT
11151 TACATCACAGTTTTTGGCTAAAAATGCTTTCCAGGGCCCCAACTCAGTTTTGCCTGATTTTTGGC
580 TACATCACAGTTTTTGGCTAAAAATGCTTTCCAGGGCCCCAACTCAGTTTTGCCTGATTTTTGGC
* * * * * *
11216 ACCAACACTCCTTCGAATATCTACATTCATCTAACCAATTCTCAGCCACATTGGATTTAAGGATT
1 ACCAACACTCCTT-AAAAATCTACATTCATCTAACCAAATCCCAGCCACATTAGATTTAAGAATT
* * *
11281 TGTTTTTACGGGCATTTGAA-CAATGTTTCGATTTAATCAGAAATTAATTCAGAAAAAATAGGAA
65 CGTTTTTACGGGCATCTGAATC-ATGTTTCAATTTAATCAGAAATTAATTCAGAAAAAAT-----
* * *
11345 AAACGATATTAGAAGCGAGAAAAGCCCTTCAACCCTTTTTTTTTCG-CTGAATTATAT-ATCTTT
124 ----GATATTAGAAGCGAGAAAAGCCATTCAA----TCTTTTTGCGACTGAATTATATAAT-TTT
* **
11408 TATGAGTATTTTGTGACCCAAAATTGAGGAGAAATTTTTTGGA-TAAGTTTTTGCAAAATTTTAG
180 TATGAGTA--TTGTGACCAAAAATTGAGGAGAAA-TTTTTCAATTAAGTTTTTGCAAAATTTTAG
* *
11472 CCGAAATCGTGTAC-AA-CATCACGATTTTTGGCTAAAAATGCGTTAC-GGGACACGA-CTCAGA
242 CCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTT-CTGGGAC-CCATCTCAGA
* * * * *
11533 TTTGCATGATTTTTGGCGCCCAGACTCCTTAAAATATCTATATTCATCTAACCAAATATCGGTC-
305 TTTGCATGATTTTTGGCGCCAAGACTCATTAAAATATATATATTAATCTAACCAAATATCAG-CA
* * * **
11597 ATATTGGATTTGA-GAAATTGTTTTTACGAGCATC-TGAATATTGTTTCGATTTAAGTAGAAATT
369 ACATTGGATTTAACG-AATTGTTTTTACGAGCATCGGGAA-ACGGTTTCGATTTAAGTAGAAA-T
* * *
11660 AATTCGAAAAAACGATAGTAAAAGCGTGAAAACCCTTTCAATCTTTTTGGCGTTGAATTATAGAA
431 AAATAGAAAAAACGATAGTAAAAGCGTGAAAACCCTTTCAATCTTTTTGGCGGTGAATTATAGAA
* * *
11725 TTTTTATGACTATTTTGGCCAAAAATTGAGGAAAAATCTTTCGGGTCAATTTTT
496 TTTCTATGACTATTGTGGCCAAAAATTAAGGAAAAATCTTTCGGGTCAATTTTT
11779 GTAATCACAG
Statistics
Matches: 467, Mismatches: 65, Indels: 48
0.81 0.11 0.08
Matches are distributed among these distances:
644 13 0.03
645 97 0.21
654 31 0.07
655 4 0.01
656 11 0.02
657 228 0.49
658 23 0.05
659 54 0.12
660 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (644 bp):
ACCAACACTCCTTAAAAATCTACATTCATCTAACCAAATCCCAGCCACATTAGATTTAAGAATTC
GTTTTTACGGGCATCTGAATCATGTTTCAATTTAATCAGAAATTAATTCAGAAAAAATGATATTA
GAAGCGAGAAAAGCCATTCAATCTTTTTGCGACTGAATTATATAATTTTTATGAGTATTGTGACC
AAAAATTGAGGAGAAATTTTTCAATTAAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACC
ATCACGATTTTTGGCTAAAAACGCGTTCTGGGACCCATCTCAGATTTGCATGATTTTTGGCGCCA
AGACTCATTAAAATATATATATTAATCTAACCAAATATCAGCAACATTGGATTTAACGAATTGTT
TTTACGAGCATCGGGAAACGGTTTCGATTTAAGTAGAAATAAATAGAAAAAACGATAGTAAAAGC
GTGAAAACCCTTTCAATCTTTTTGGCGGTGAATTATAGAATTTCTATGACTATTGTGGCCAAAAA
TTAAGGAAAAATCTTTCGGGTCAATTTTTTTGCAAAATTTTAGCCGAAATCGTGTACATTACATC
ACAGTTTTTGGCTAAAAATGCTTTCCAGGGCCCCAACTCAGTTTTGCCTGATTTTTGGC
Found at i:13157 original size:332 final size:330
Alignment explanation
Indices: 11788--13939 Score: 1740
Period size: 332 Copynumber: 6.6 Consensus size: 330
11778 TGTAATCACA
* * * * * *
11788 GTTTTTGGCTAAAAACGCGTTTCGGAGGTCTGACTCAGTTTT-ACATTATTTTTGGCGCTAATAC
1 GTTTTTGGCTAAAAACGCGTTCCGGAGGCCCGACTCAGTTTTGA-ATGATTTTTGGCGCCAAGAC
* * * *
11852 TCCTTCAAATGTCTATATACATCTAACCAAATCTCAGCCACATTGGATTTAATAATTTGTTTTTA
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTA
* * *
11917 CGAGCATCCGTATAATGTTTCGATTTAATCAGAAATTAATT--AAAAAAATAGAAAAAAAAACGA
130 CGAGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAAAATAG---AAAAAACGA
* * * *
11980 TATTAGAAGCGCGGAAAGCCCTTCAATCTTTTTGGCCTTGAATTTATATATTTTTTAAGAGTATT
192 TATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAA-TTATATA-TTTTTATGACTATT
* * * * *
12045 GTGG-AAAGAAATTCAGTAAAAATCTTTCGGTTCATTTTTTGTAAAATTTTAGCTGAAATCAT-T
255 GTGGCCAA-AAATTGAGGAAAAATCTTTCGGGTCA-TTTTTGTAAAATTTTAGCTGAAATCGTGT
* *
12108 --T-GCTATCACG
318 ACTAACTATCAAG
* ** * *
12118 GTTTTTGGCTAAAAACGCGTTCCGGAGTCTTGACTCAGTATT-ACATGATTTTTGGCACCAAGAC
1 GTTTTTGGCTAAAAACGCGTTCCGGAGGCCCGACTCAGTTTTGA-ATGATTTTTGGCGCCAAGAC
* * * * *
12182 TCCTTCAAAAATGTATATTCATCTAACCAAACCCCAGCCACATTGGATTTAAGAATTTGTTTTTA
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTA
*
12247 CGGGCATCTGAATCATGTTTCGATTTAATC-GAAAATTAATTCG---------GAAAAACACGAT
130 CGAGCATCTGAATCATGTTTCGATTTAATCAG-AAATTAATTCGAAAAAAATAGAAAAA-ACGAT
* * ** * *
12302 ATTAGAACCGCGAAAAGCCATTCAATCTTTTTGGCACTGAATTATATATTTTTTATGATTATTCT
193 ATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATA-TTTTTATGACTATTGT
* * * *** * *
12367 GG-CTAAAATTGAGGATAAATTTTTCAATTCAGTTTTTGTAAAATTTTAGCCGAAATTGTGTACT
257 GGCCAAAAATTGAGGAAAAATCTTTCGGGTCA-TTTTTGTAAAATTTTAGCTGAAATCGTGTACT
* *
12431 AACCATCACG
321 AACTATCAAG
* * * * **
12441 GTTTTTGGTTAAAAATGCGTTCTGG-GGATCCC-ATCTCAGTTTTGCATGATTTTTGATGCCAAG
1 GTTTTTGGCTAAAAACGCGTTCCGGAGG--CCCGA-CTCAGTTTTGAATGATTTTTGGCGCCAAG
* ** *
12504 ACTCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTGGATTTAACG-ATTTGTTT
63 ACTCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAA-GAATTTGTTT
* * ** *
12568 TTACGAGCATCGGAAATCA-GTTTCGATTT-A-C------TAATT-AAAAAAAATAGGTAAATCG
127 TTACGAGCATCTG-AATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAAAATAGAAAAAACG
* * * * *
12623 ATATTATTAA-CGTGAAAAGCCCTTCAATATTTTTGCCGTTGAATTATATATTTTTTTATGATTA
191 ATATTA-GAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATA--TTTTTATGACTA
* * * * * * *
12687 TTGTCGCCAGAAATTAAGGAGAAATCTTTCGGGTAATTTTTTTGTAAAATTTTAGGC-AAAATCA
253 TTGTGGCCAAAAATTGAGGAAAAATCTTTCGGGTCA--TTTTTGTAAAATTTTA-GCTGAAATCG
12751 TGTACTAACTATCACA-
315 TGTACTAACTATCA-AG
* * * * * *
12767 GTTTTTTGATAAAAACGCGTTTCGGAGGCCCGACTCAGTATT-ACATAAATTTTGGCGCCAAGAC
1 GTTTTTGGCTAAAAACGCGTTCCGGAGGCCCGACTCAGTTTTGA-ATGATTTTTGGCGCCAAGAC
* * ** *
12831 TCCTTCAAATATCTATATTCATCTAACCAAATATCAGCAACAATGGAAATAAGAATTTGTTTTTC
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTA
* * *
12896 CGGGCTTCTGAATCATGTTTC-ATATTAATCAGAAATTAATTCCGAAAAAAATAGAAAAAATGAT
130 CGAGCATCTGAATCATGTTTCGAT-TTAATCAGAAATTAATT-CGAAAAAAATAGAAAAAACGAT
* * * * *
12960 ATTGGAAGCGCGAAAATCCATTCAATCTTTTTGGTGGTGAATTATATA-TTTTATGACTATTGTG
193 ATTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGACTATTGTG
*
13024 GCCAAAAAATT-AGGAAAAATCTTTCGGGTCATCTTTTGTAAAATTTTATCTGAAATCGTGTACT
258 GCC-AAAAATTGAGGAAAAATCTTTCGGGTCAT-TTTTGTAAAATTTTAGCTGAAATCGTGTACT
*
13088 AATTATCAAG
321 AACTATCAAG
* *
13098 GTTTTTTGGCTAAAAACACGTTCCGGAGGCCCGACTCAGTTTTGAATGATTTATGGCGCCAAGAC
1 G-TTTTTGGCTAAAAACGCGTTCCGGAGGCCCGACTCAGTTTTGAATGATTTTTGGCGCCAAGAC
* * * * *
13163 TCCTTCAAATATCAATATTCATCTAACCATATCTCAACCACATTGGATTTAAGGATTTGTTTTTA
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTA
* * * *** *
13228 C-AGACATTTGAATCATGTTTCGATTTAAACATAAATTAATTCGGGTAAAA-A-AAAAAACGACA
130 CGAG-CATCTGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAAAATAGAAAAAACGATA
* * * * * *
13290 ATAGAAGCTCGAAAACCCCTTCAATCTTTATGGCGTTGAATTATATATTTTTTTGAGTATTGTGG
194 TTAGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGACTATTGTGG
* * * * * *
13355 CCAGAAATTGAGGAGAAATTTTTCAGTTCAGATTTTGTAAAATTTTA---G---T--TG----AA
259 CCAAAAATTGAGGAAAAATCTTTCGGGTCA-TTTTTGTAAAATTTTAGCTGAAATCGTGTACTAA
*
13408 --ATCACG
323 CTATCAAG
* * * * **
13414 GTTTTTGGTTAAAAACGCGTTCC-G-GGACC-ATCTCAGTTTTGCATGATTTTTTGTACCAAGAC
1 GTTTTTGGCTAAAAACGCGTTCCGGAGGCCCGA-CTCAGTTTTGAATGATTTTTGGCGCCAAGAC
* ** * *
13476 TCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTAGATTTAAGAATTTGTTTTTA
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTA
* * ** * * * ** * *
13541 CGAGCATCAGAAACCGGTTTCAATTTAATTAGAAATTAATTCGGAATAAAATAGGCAAATCGTTA
130 CGAGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTC-GAAAAAAATAGAAAAAACGATA
* * * * * *
13606 TTATAACCGTC-AAAAGCCCTTCGATCTTTTTGACATTGAATTATATAATTTTGT-TTACATATT
194 TTAGAAGCG-CGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATAT-ATTTT-TATGAC-TATT
* ** ** * *
13669 TTGGCCAAAAA-TGAAGGAAAAATCTTTCGGGTCAATTTTTACAAAATTTTATATAAAATTGTGT
255 GTGGCCAAAAATTG-AGGAAAAATCTTTCGGGTC-ATTTTTGTAAAATTTTAGCTGAAATCGTGT
* * *
13733 AGTAACCATCACG
318 ACTAACTATCAAG
* * * * ** * * *
13746 ATTTTTAGCTAAAAACGCGTTCTAGG-GCCCCGACTCAGTTTTGTTTGATTTTTGGCACTAAAAC
1 GTTTTTGGCTAAAAACGCGTTC-CGGAGGCCCGACTCAGTTTTGAATGATTTTTGGCGCCAAGAC
* * * * * * *
13810 TCCTTGAAATATCTATAATCATCTAATCAAATCTAAGGCCA-ATTGGATTTAAGGATTTGTCTTT
65 TCCTTCAAATATCTATATTCATCTAACCAAATCTCA-GCAACATTGGATTTAAGAATTTGTTTTT
* * * * * * *
13874 A-GAAGCATCTGAATCTTATTTGGATTTAATTAAAAATTATTTCAGGAAAAAA-AG-AAAAACGA
129 ACG-AGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTC-GAAAAAAATAGAAAAAACGA
13936 TATT
192 TATT
13940 TGAAACTTGA
Statistics
Matches: 1460, Mismatches: 275, Indels: 172
0.77 0.14 0.09
Matches are distributed among these distances:
312 1 0.00
313 115 0.08
314 9 0.01
315 21 0.01
316 52 0.04
317 10 0.01
318 44 0.03
319 45 0.03
320 30 0.02
321 41 0.03
322 5 0.00
323 74 0.05
324 131 0.09
325 121 0.08
326 57 0.04
327 6 0.00
329 55 0.04
330 202 0.14
331 41 0.03
332 208 0.14
333 17 0.01
334 119 0.08
335 56 0.04
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (330 bp):
GTTTTTGGCTAAAAACGCGTTCCGGAGGCCCGACTCAGTTTTGAATGATTTTTGGCGCCAAGACT
CCTTCAAATATCTATATTCATCTAACCAAATCTCAGCAACATTGGATTTAAGAATTTGTTTTTAC
GAGCATCTGAATCATGTTTCGATTTAATCAGAAATTAATTCGAAAAAAATAGAAAAAACGATATT
AGAAGCGCGAAAAGCCCTTCAATCTTTTTGGCGTTGAATTATATATTTTTATGACTATTGTGGCC
AAAAATTGAGGAAAAATCTTTCGGGTCATTTTTGTAAAATTTTAGCTGAAATCGTGTACTAACTA
TCAAG
Found at i:13717 original size:979 final size:965
Alignment explanation
Indices: 11782--13841 Score: 2413
Period size: 979 Copynumber: 2.1 Consensus size: 965
11772 AATTTTTGTA
* * * *
11782 ATCACAGTTTTTGGCTAAAAACGCGTTTCGGAGGTCTGACTCAGTTTTACATTATTTTTGGCGCT
1 ATCACAGTTTTTAGCTAAAAACGCGTTTCGGAGGCCCGACTCAGTTTTACATAATTTTTGGCGCT
* * * * * * ** *
11847 AATACTCCTTCAAATGTCTATATACATCTAACCAAATCTCAGCCACATTGGATTTAATAATTTGT
66 AAAACTCCTTCAAATATCTATATTCATCTAACCAAATATCAGCAACAATGGAAATAAGAATTTGT
*
11912 TTTTACGAGCATCCGTATAATGTTTCGATTTAATCAGAAATTAATTAAAAAAATAGAAAAAAAAA
131 TTTTACGAGCATCCGAATAATGTTTCGATTTAATCAGAAATTAATTAAAAAAATAG--AAAAAAA
* * * *
11977 CGATATTAGAAGCGCGGAAAGCCCTTCAATCTTTTTGGCCTTGAATTTATATATTTTTTAAGAGT
194 CGATATTAGAAGCGCGAAAAGCCATTCAATCTTTTTGGCCGTGAATTTATATA-TTTTTAAGACT
* * *
12042 ATTGTGGAAAGAAATTCAGTAAAAATCTTTCGGTTCATTTTTTGTAAAATTTTAGCTGAAATCAT
258 ATTGTGGAAAGAAATTCAGGAAAAATCTTTCGGGTCATCTTTTGTAAAATTTTAGCTGAAATCAT
* * * * ** *
12107 TTGCTATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCTTGACTCAGTATTACATGATTTTTG
323 TTACTATCAAGGTTTTTGGCTAAAAACACGTTCCGGAGGCCCGACTCAGTATTACATGATTTATG
** *
12172 GCACCAAGACTCCTTCAAAAATGTATATTCATCTAACCAAACCCCAGCCACATTGGATTTAAGAA
388 GCACCAAGACTCCTTCAAAAATCAATATTCATCTAACCAAACCCCAACCACATTGGATTTAAGAA
* * * * *
12237 TTTGTTTTTACGGGCATCTGAATCATGTTTCGATTTAATCGAAAATTAATTCGGAAAAACACGAT
453 TTTGTTTTTACAGACATCTGAATCATGTTTCGATTTAAACGAAAATTAATTCGGAAAAAAACGAC
* * * *
12302 ATTAGAACCGCGAAAAGCCATTCAATCTTTTTGGCACTGAATTATATATTTTTTATGATTATTCT
518 AATAGAACCGCGAAAACCCATTCAATCTTTATGGCACTGAATTATATATTTTTTATGAGTATTCT
* * *
12367 GGCTAAAATTGAGGATAAATTTTTCAATTCAGTTTTTGTAAAATTTTAGCCGAAATTGTGTACTA
583 GGCCAAAATTGAGGAGAAATTTTTCAATTCAGATTTTGTAAAATTTTA--CG--A-TGTG---TA
* *
12432 ACCATCACGGTTTTTGGTTAAAAATGCGTTCTGGGGATCCCATCTCAGTTTTGCATGATTTTTGA
640 A-CATCACGGTTTTTGGTTAAAAACGCGTTCTCGGGA-CCCATCTCAGTTTTGCATGATTTTTGA
* *
12497 TGCCAAGACTCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTGGATTTAACGAT
703 TACCAAGACTCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTAGATTTAACGAT
* * * *
12562 TTGTTTTTACGAGCATCGGAAATCAGTTTCGATTTACTAATTAAAAAAAATAGGTAAATCGATAT
768 TTGTTTTTACGAGCATCAGAAACCAGTTTCAATTTACTAATTAAAAAAAATAGGCAAATCGATAT
* * * *
12627 TATTAACGTGAAAAGCCCTTCAATATTTTTGCCGTTGAATTATATATTTTTTTATGATTATTGTC
833 TATTAACGTCAAAAGCCCTTCAATATTTTTGACATTGAATTATATATTTTTTTATCATTATTGTC
* * * ** *
12692 GCCAGAAATTAAGGAGAAATCTTTCGGGTAATTTTTTTGTAAAATTTTAGGCAAAATCATGTACT
898 GCCAAAAATGAAGGAAAAATCTTTCGGGTAA-TTTTTTACAAAATTTTAGACAAAATCATGTACT
*
12757 AACT
962 AACC
* * * * *
12761 ATCACAGTTTTTTGATAAAAACGCGTTTCGGAGGCCCGACTCAGTATTACATAAATTTTGGCGCC
1 ATCACAGTTTTTAGCTAAAAACGCGTTTCGGAGGCCCGACTCAGTTTTACATAATTTTTGGCGCT
*
12826 AAGACTCCTTCAAATATCTATATTCATCTAACCAAATATCAGCAACAATGGAAATAAGAATTTGT
66 AAAACTCCTTCAAATATCTATATTCATCTAACCAAATATCAGCAACAATGGAAATAAGAATTTGT
* * * * *
12891 TTTTCCGGGCTTCTGAATCATGTTTC-ATATTAATCAGAAATTAATTCCGAAAAAAATAG-AAAA
131 TTTTACGAGCATCCGAATAATGTTTCGAT-TTAATCAGAAATTAATT---AAAAAAATAGAAAAA
* * * ** *
12954 AATGATATTGGAAGCGCGAAAATCCATTCAATCTTTTTGGTGGTGAA-TTATATA-TTTTATGAC
192 AACGATATTAGAAGCGCGAAAAGCCATTCAATCTTTTTGGCCGTGAATTTATATATTTTTAAGAC
*
13017 TATTGTGGCCAAA-AAATT-AGGAAAAATCTTTCGGGTCATCTTTTGTAAAATTTTATCTGAAAT
257 TATTGTGG--AAAGAAATTCAGGAAAAATCTTTCGGGTCATCTTTTGTAAAATTTTAGCTGAAAT
* * *
13080 CGTGTACTAATTATCAAGGTTTTTTGGCTAAAAACACGTTCCGGAGGCCCGACTCAGTTTTGA-A
320 CAT-T--T-ACTATCAAGG-TTTTTGGCTAAAAACACGTTCCGGAGGCCCGACTCAGTATT-ACA
* * * * *
13144 TGATTTATGGCGCCAAGACTCCTTCAAATATCAATATTCATCTAACCATATCTCAACCACATTGG
379 TGATTTATGGCACCAAGACTCCTTCAAAAATCAATATTCATCTAACCAAACCCCAACCACATTGG
* *
13209 ATTTAAGGATTTGTTTTTACAGACATTTGAATCATGTTTCGATTTAAAC-ATAAATTAATTCGGG
444 ATTTAAGAATTTGTTTTTACAGACATCTGAATCATGTTTCGATTTAAACGA-AAATTAATTC-GG
* * * **
13273 TAAAAAAAAAAACGACAATAGAAGCTCGAAAACCCCTTCAATCTTTATGGCGTTGAATTATATAT
507 -----AAAAAAACGACAATAGAACCGCGAAAACCCATTCAATCTTTATGGCACTGAATTATATAT
* *
13338 TTTTT-TGAGTATTGTGGCCAGAAATTGAGGAGAAATTTTTCAGTTCAGATTTTGTAAAATTTTA
567 TTTTTATGAGTATTCTGGCCA-AAATTGAGGAGAAATTTTTCAATTCAGATTTTGTAAAATTTTA
13402 -G-T-TG-AA-ATCACGGTTTTTGGTTAAAAACGCGTTC-CGGGA-CCATCTCAGTTTTGCATGA
631 CGATGTGTAACATCACGGTTTTTGGTTAAAAACGCGTTCTCGGGACCCATCTCAGTTTTGCATGA
13460 TTTTTTG-TACCAAGACTCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTAGAT
696 -TTTTTGATACCAAGACTCATTGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTAGAT
* *
13524 TTAA-GAATTTGTTTTTACGAGCATCAGAAACCGGTTTCAATTTAATTAGAAATTAATTCGGAAT
760 TTAACG-ATTTGTTTTTACGAGCATCAGAAACCAGTTTCAATTT-ACT---AATTAA-----AA-
* * *
13588 AAAATAGGCAAATCGTTATTA-TAACCGTCAAAAGCCCTTCGATCTTTTTGACATTGAATTATAT
814 AAAATAGGCAAATCGATATTATTAA-CGTCAAAAGCCCTTCAATATTTTTGACATTGAATTATAT
* *
13652 AATTTTGTTTA-CA-TATTTTGGCCAAAAATGAAGGAAAAATCTTTCGGGTCAA-TTTTTACAAA
878 -ATTTT-TTTATCATTATTGTCGCCAAAAATGAAGGAAAAATCTTTCGGGT-AATTTTTTACAAA
* * ** *
13714 ATTTTATATAAAATTGTGTAGTAACC
940 ATTTTAGACAAAATCATGTACTAACC
* * *** * *
13740 ATCAC-GATTTTTAGCTAAAAACGCGTTCTAGG-GCCCCGACTCAGTTTTGTTTGATTTTTGGCA
1 ATCACAG-TTTTTAGCTAAAAACGCGTT-TCGGAGGCCCGACTCAGTTTTACATAATTTTTGGCG
* * *
13803 CTAAAACTCCTTGAAATATCTATAATCATCTAATCAAAT
64 CTAAAACTCCTTCAAATATCTATATTCATCTAACCAAAT
13842 CTAAGGCCAA
Statistics
Matches: 920, Mismatches: 123, Indels: 76
0.82 0.11 0.07
Matches are distributed among these distances:
969 1 0.00
970 111 0.12
971 8 0.01
972 4 0.00
973 27 0.03
974 6 0.01
975 2 0.00
976 58 0.06
977 6 0.01
978 13 0.01
979 308 0.33
980 96 0.10
981 155 0.17
982 17 0.02
984 1 0.00
986 12 0.01
987 95 0.10
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (965 bp):
ATCACAGTTTTTAGCTAAAAACGCGTTTCGGAGGCCCGACTCAGTTTTACATAATTTTTGGCGCT
AAAACTCCTTCAAATATCTATATTCATCTAACCAAATATCAGCAACAATGGAAATAAGAATTTGT
TTTTACGAGCATCCGAATAATGTTTCGATTTAATCAGAAATTAATTAAAAAAATAGAAAAAAACG
ATATTAGAAGCGCGAAAAGCCATTCAATCTTTTTGGCCGTGAATTTATATATTTTTAAGACTATT
GTGGAAAGAAATTCAGGAAAAATCTTTCGGGTCATCTTTTGTAAAATTTTAGCTGAAATCATTTA
CTATCAAGGTTTTTGGCTAAAAACACGTTCCGGAGGCCCGACTCAGTATTACATGATTTATGGCA
CCAAGACTCCTTCAAAAATCAATATTCATCTAACCAAACCCCAACCACATTGGATTTAAGAATTT
GTTTTTACAGACATCTGAATCATGTTTCGATTTAAACGAAAATTAATTCGGAAAAAAACGACAAT
AGAACCGCGAAAACCCATTCAATCTTTATGGCACTGAATTATATATTTTTTATGAGTATTCTGGC
CAAAATTGAGGAGAAATTTTTCAATTCAGATTTTGTAAAATTTTACGATGTGTAACATCACGGTT
TTTGGTTAAAAACGCGTTCTCGGGACCCATCTCAGTTTTGCATGATTTTTGATACCAAGACTCAT
TGGAATATCTATATTCATCTGACCAAATCTCAGCAACATTAGATTTAACGATTTGTTTTTACGAG
CATCAGAAACCAGTTTCAATTTACTAATTAAAAAAAATAGGCAAATCGATATTATTAACGTCAAA
AGCCCTTCAATATTTTTGACATTGAATTATATATTTTTTTATCATTATTGTCGCCAAAAATGAAG
GAAAAATCTTTCGGGTAATTTTTTACAAAATTTTAGACAAAATCATGTACTAACC
Done.