genome.fa.s14705.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014705.1 Corchorus olitorius cultivar O-4 contig14738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115836

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4081--4152	20	3.5	20	69	14	58	31	27	6	33	1.83
4107--4170	21	3.1	21	68	4	67	32	29	6	31	1.82
4135--4396	32	8.0	32	90	7	420	33	25	9	30	1.87
4135--4359	63	3.6	63	98	1	425	34	25	9	30	1.88
4135--4359	95	2.4	95	97	1	425	34	25	9	30	1.88
4325--4385	20	3.0	20	68	0	59	31	29	9	29	1.89
6599--6940	171	2.0	172	90	2	546	40	17	17	24	1.90
8486--8526	22	2.0	20	86	13	57	36	9	12	41	1.76
8718--9080	188	1.9	188	99	0	717	40	17	15	26	1.89
9532--9638	53	2.0	53	96	1	198	14	20	15	49	1.79
11833--11857	12	2.1	12	100	0	50	36	8	8	48	1.62
17910--18047	60	2.3	59	81	8	154	35	15	18	30	1.92
18090--18257	31	5.6	30	74	8	135	26	18	20	34	1.96
18118--18223	29	3.6	29	75	9	115	28	17	18	34	1.94
18091--18254	60	2.7	60	89	0	256	26	18	20	35	1.95
20996--21038	19	2.2	19	87	4	59	20	13	16	48	1.80
21255--21286	16	2.0	16	93	0	55	53	25	6	15	1.65
38688--38722	5	7.0	5	93	0	52	0	20	2	77	0.90
42612--42716	52	2.0	52	85	7	142	42	13	13	30	1.82
43745--43770	8	3.2	8	100	0	52	38	11	11	38	1.78
43811--43852	13	3.3	13	75	18	52	66	2	4	26	1.23
43892--43951	29	2.1	29	96	0	111	51	16	8	23	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46642--46666	10	2.5	10	100	0	50	84	0	16	0	0.63
68826--68871	22	2.2	22	84	7	60	71	0	23	4	1.03
68826--68881	20	2.9	20	77	15	55	69	0	26	3	1.04
88798--88832	18	1.9	18	88	11	54	68	8	8	14	1.38
98029--98060	9	3.6	9	91	0	55	9	0	56	34	1.32
98071--98131	12	5.1	12	73	0	50	13	11	40	34	1.80
110059--110094	14	2.5	15	86	9	56	16	22	0	61	1.35
110695--111070	66	5.7	66	80	2	313	24	25	25	24	2.00
110692--111071	132	2.9	132	79	1	409	24	26	24	24	2.00
111028--111152	66	1.9	66	83	0	160	21	28	23	26	1.99
110878--111116	132	1.8	132	79	1	282	23	27	24	24	2.00
112783--113108	163	2.0	163	95	0	589	39	13	10	35	1.80

Tables:   1

The End!