Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014708.1 Corchorus olitorius cultivar O-4 contig14741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75037

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2352--2397
6
6.7
7
87
12
53
52
0
0
47
1.00
2359--2398
2
20.5
2
94
5
73
50
0
0
50
1.00
3992--4026
11
3.1
11
91
4
52
0
22
0
77
0.78
3994--4027
12
2.9
12
91
4
52
0
26
0
73
0.83
4544--4568
12
2.1
12
100
0
50
60
0
8
32
1.26
5078--5182
55
1.9
55
86
3
149
31
5
15
47
1.68
9477--9711
72
3.3
71
89
5
386
36
13
15
34
1.87
32005--34574
658
3.9
655
89
2
3585
33
14
17
34
1.90
37369--37429
30
2.1
29
84
9
79
49
19
1
29
1.58
40837--40867
2
15.5
2
93
0
53
54
0
0
45
0.99
44456--44485
15
1.9
16
93
6
53
43
0
3
53
1.17
44837--48211
665
5.1
657
80
8
3291
33
14
15
37
1.88
44837--48211
332
10.2
329
78
10
2781
33
14
15
37
1.88
52802--52859
27
2.2
27
87
3
82
20
8
5
65
1.40
54411--55070
334
2.0
335
82
4
823
33
13
16
36
1.88
55686--58135
321
7.4
322
71
14
1159
33
13
16
36
1.87
57207--57262
2
28.0
2
88
0
85
48
0
3
48
1.19
58270--60046
661
2.7
651
83
6
2118
34
14
16
35
1.88
58270--60022
323
5.4
321
78
9
1646
34
14
16
35
1.89
61614--64182
321
7.8
322
76
8
2106
33
13
16
36
1.88
62494--64182
646
2.6
638
81
6
1539
33
13
16
36
1.88
73749--73790
21
2.0
21
95
0
75
42
30
4
21
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73978--74049
29
2.4
30
79
4
74
27
26
13
31
1.94
74346--74422
29
2.6
30
83
6
102
32
14
24
28
1.94

Tables:   1

The End!