Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014709.1 Corchorus olitorius cultivar O-4 contig14742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92395

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1931--1988
24
2.4
24
100
0
116
29
10
8
51
1.65
15778--15835
19
2.9
19
87
5
80
29
22
12
36
1.90
18329--18493
83
2.0
82
97
1
312
54
21
3
20
1.59
18338--18465
39
3.2
39
64
21
100
53
23
3
19
1.59
18624--18655
15
2.1
15
100
0
64
46
6
12
34
1.67
26772--26810
1
39.0
1
100
0
78
100
0
0
0
0.00
32475--32554
32
2.5
31
85
2
106
18
26
23
31
1.98
37262--37301
7
5.4
7
88
11
62
72
0
2
25
0.97
37256--37301
14
3.0
15
87
12
67
69
0
2
28
1.00
40739--40764
6
4.3
6
100
0
52
46
19
15
19
1.85
70528--70561
2
17.0
2
100
0
68
50
0
0
50
1.00
81136--81200
27
2.4
27
86
0
94
26
16
41
15
1.88
81193--81231
15
2.6
15
83
0
51
35
12
46
5
1.65
89728--91666
319
6.0
317
78
11
1605
33
15
16
35
1.90

Tables:   1

The End!