Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001471.1 Corchorus olitorius cultivar O-4 contig01471, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 996

Length: 1660
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41


Found at i:209 original size:20 final size:21

Alignment explanation


    Indices: 164--209  Score: 51
    Period size: 19  Copynumber: 2.3  Consensus size: 21

        154 AATTTATAAA

                          *      
        164 ACATATAAGAAATATTAAAAT
          1 ACATATAAGAAATAATAAAAT

                      *        * 
        185 A-ATATAA-ATATAATAAATT
          1 ACATATAAGAAATAATAAAAT

                  
        204 ACATAT
          1 ACATAT

        210 TAATTTGTAA


Statistics
Matches: 21,  Mismatches: 3, Indels: 3
        0.78            0.11        0.11

Matches are distributed among these distances:
  19   10  0.48
  20   10  0.48
  21    1  0.05

ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33


Consensus pattern (21 bp):   
ACATATAAGAAATAATAAAAT

Found at i:247 original size:35 final size:33

Alignment explanation


    Indices: 184--250  Score: 82
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        174 AATATTAAAA

                               *             
        184 TAATATAAATATAATAAATTACATATTAATTTG
          1 TAATATAAATATAATAAATGACATATTAATTTG

                   *                           
        217 TAATATATATATATATAACATGA-ATAATTAATTT
          1 TAATATAAATATA-ATAA-ATGACAT-ATTAATTT

        251 TTATAAATCA


Statistics
Matches: 29,  Mismatches: 2, Indels: 4
        0.83            0.06        0.11

Matches are distributed among these distances:
  33   12  0.41
  34    6  0.21
  35   11  0.38

ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43


Consensus pattern (33 bp):   
TAATATAAATATAATAAATGACATATTAATTTG
Done.