Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014712.1 Corchorus olitorius cultivar O-4 contig14745, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217640

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--1020
335
3.1
330
76
11
871
32
13
18
35
1.90
796--1301
263
1.9
264
86
5
721
35
13
15
35
1.86
9797--9923
63
2.0
63
96
0
236
29
24
14
31
1.94
22073--22138
29
2.3
29
91
0
114
27
4
4
63
1.33
28154--28179
13
2.0
13
100
0
52
0
23
7
69
1.14
29997--30037
18
2.3
19
84
12
52
12
29
0
58
1.34
42515--42557
2
21.5
2
100
0
86
51
0
0
48
1.00
43583--43628
22
2.0
23
84
12
60
58
13
0
28
1.35
61277--61331
28
2.0
28
92
0
92
47
1
5
45
1.36
61585--61832
126
2.0
121
82
6
302
39
12
12
35
1.80
71139--71210
29
2.4
30
97
2
137
45
13
11
29
1.78
75162--75331
84
2.0
84
97
0
322
25
31
13
28
1.94
75996--76051
21
2.7
20
72
8
58
17
39
16
26
1.91
94824--94849
10
2.6
10
100
0
52
19
0
19
61
1.35
97975--98008
12
2.8
12
100
0
68
38
8
8
44
1.67
103956--104027
29
2.4
29
76
2
81
48
15
16
19
1.81
107936--107961
2
13.0
2
100
0
52
50
0
0
50
1.00
111469--111502
17
1.9
17
88
5
50
76
0
8
14
1.01
116627--116671
14
3.4
14
76
14
51
53
6
20
20
1.67
124195--124251
24
2.4
24
84
0
69
21
10
43
24
1.83
130402--130463
31
2.0
31
100
0
124
32
22
3
41
1.70
131667--131779
57
2.0
57
91
0
181
35
15
20
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136154--136198
24
2.0
23
82
8
56
31
24
20
24
1.98
142376--142442
29
2.3
29
85
10
91
17
20
14
46
1.84
142542--142611
29
2.4
29
78
4
79
47
17
17
18
1.83
144175--144207
14
2.4
14
100
0
66
15
27
15
42
1.86
149932--149959
11
2.5
11
100
0
56
82
0
0
17
0.68
153767--153797
3
10.3
3
100
0
62
67
0
0
32
0.91
155588--155620
2
16.5
2
100
0
66
51
0
0
48
1.00
156545--156569
2
12.5
2
100
0
50
52
0
0
48
1.00
158824--158866
3
14.7
3
90
4
70
32
2
0
65
1.06
159325--159403
38
2.2
37
91
8
128
54
1
13
30
1.48
165344--165548
103
2.0
101
82
7
245
40
11
12
35
1.79
179755--179803
3
14.7
3
80
19
53
40
0
28
30
1.57
179758--179803
7
6.7
7
97
2
85
41
0
28
30
1.56
189987--190185
99
2.0
99
95
1
355
43
14
12
29
1.81
195730--195766
12
3.2
12
78
21
51
2
8
0
89
0.58
195729--195766
10
3.9
10
82
6
51
2
10
0
86
0.66
195728--195765
19
2.0
19
90
10
60
5
10
0
84
0.77

Tables:   1

The End!