Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014713.1 Corchorus olitorius cultivar O-4 contig14746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31282

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
684--723
21
1.9
21
94
0
71
42
30
10
17
1.82
5322--5530
104
2.0
103
98
1
355
33
18
7
40
1.79
6661--6702
21
2.0
21
95
0
75
45
19
11
23
1.83
12885--12977
46
2.0
45
93
2
159
36
12
16
34
1.87
25522--25554
15
2.1
16
88
5
50
12
12
3
72
1.23
26892--27195
44
7.0
44
80
5
309
42
18
16
23
1.89
26906--27193
132
2.2
127
87
5
409
40
19
16
23
1.90
27113--27381
98
2.7
97
88
2
367
43
17
18
21
1.88
27252--27543
152
1.9
152
80
3
345
43
17
15
23
1.87
27461--27625
42
4.0
41
79
10
176
43
18
15
21
1.87
27683--27764
41
2.1
39
84
10
107
42
20
12
24
1.86
27638--27799
42
4.0
40
75
13
136
43
19
14
23
1.87
27507--27757
135
1.8
133
85
9
355
42
18
15
23
1.89
27700--27799
41
2.4
40
86
5
128
42
20
11
27
1.85
27701--27799
43
2.4
41
86
5
128
42
20
11
26
1.85
27429--27979
177
3.1
172
81
9
538
43
18
14
23
1.87
27815--27978
42
4.0
41
73
13
158
41
19
15
23
1.89
27815--27979
38
4.2
38
77
13
129
41
19
15
23
1.89
27821--27971
79
1.9
81
83
8
200
39
20
15
23
1.91
28107--28469
37
9.2
41
84
7
409
42
19
16
21
1.89
28487--28631
41
3.5
42
85
5
195
40
17
17
24
1.91

Tables:   1

The End!