Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014716.1 Corchorus olitorius cultivar O-4 contig14749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122871

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5929--5959
16
1.9
16
93
0
53
41
0
3
54
1.16
10275--10300
12
2.2
12
100
0
52
73
11
7
7
1.26
19235--19286
6
8.7
6
80
0
50
19
26
28
25
1.98
28516--28543
2
14.0
2
100
0
56
50
0
0
50
1.00
38796--38905
59
1.9
57
90
3
175
30
22
14
31
1.94
86065--86101
8
4.4
9
90
10
53
45
0
0
54
1.00
86072--86101
2
15.5
2
93
6
53
46
0
0
53
1.00
94998--100274
322
16.1
323
77
9
4691
35
16
14
33
1.90
94997--100274
653
8.1
645
81
8
4853
35
16
14
33
1.90
122181--122478
151
2.0
150
97
0
569
37
17
15
29
1.91
122367--122737
200
1.9
200
83
3
496
36
16
11
35
1.85

Tables:   1

The End!