genome.fa.s14717.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014717.1 Corchorus olitorius cultivar O-4 contig14750, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  143278

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66--876	322	2.5	323	83	4	925	35	16	14	33	1.89
933--1754	322	2.5	322	82	6	926	34	16	14	34	1.89
12--4021	881	4.5	881	92	1	6551	36	16	13	33	1.88
5184--6011	323	2.5	328	82	4	915	35	16	15	33	1.90
4737--6960	881	2.5	880	91	3	3587	36	15	14	32	1.89
16621--16676	26	2.2	26	87	6	78	23	8	3	64	1.38
20223--20254	2	16.0	2	100	0	64	50	0	0	50	1.00
20571--22463	672	2.8	666	82	9	2294	33	14	16	35	1.89
22007--22749	322	2.3	322	89	2	1125	31	14	17	36	1.90
23727--23756	15	2.0	15	93	0	51	83	0	16	0	0.65
24207--24294	16	5.6	16	79	1	88	4	14	38	42	1.67
24741--24812	31	2.3	31	75	17	78	61	8	4	26	1.43
25234--25266	17	1.9	17	93	0	57	0	24	48	27	1.51
25240--25283	23	1.9	23	90	0	70	2	25	45	27	1.65
25803--25984	91	2.0	91	92	0	301	28	21	18	31	1.97
26851--26883	14	2.5	13	90	9	57	54	0	0	45	0.99
26851--26886	9	4.2	9	89	10	58	55	0	0	44	0.99
29424--29467	23	1.9	23	95	0	79	11	2	40	45	1.53
31210--31268	29	2.0	29	90	0	91	32	18	1	47	1.59
31607--31736	65	2.0	65	96	0	242	38	24	10	26	1.88
31782--31877	50	1.9	50	97	0	183	45	11	15	27	1.80
32297--32371	37	2.0	37	100	0	150	26	28	10	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33594--33642	24	2.0	24	84	7	64	22	6	6	65	1.38
40195--40231	13	2.8	13	87	0	56	16	43	8	32	1.77
40230--40310	40	2.0	40	92	0	135	40	18	12	28	1.87
41211--41270	3	20.0	3	100	0	120	33	0	0	66	0.92
43794--43839	19	2.4	18	92	7	74	30	4	0	65	1.12
45962--46004	12	3.6	12	80	0	50	39	25	20	13	1.90
46600--46655	27	2.1	27	93	0	94	39	23	7	30	1.81
52483--52571	29	2.9	29	83	6	97	50	14	13	21	1.77
52846--52916	20	3.5	20	76	3	72	59	21	2	16	1.50
53451--53681	115	2.0	115	96	0	426	29	18	13	38	1.89
56122--56226	54	2.1	51	87	10	153	35	6	14	43	1.71
56772--56812	2	20.5	2	100	0	82	48	0	0	51	1.00
59574--59661	12	7.7	12	71	14	69	39	0	1	59	1.05
59574--59686	34	3.3	33	78	12	129	38	0	1	59	1.08
59587--59686	24	4.2	24	73	20	95	38	0	2	60	1.09
59608--59705	12	6.9	14	72	19	53	41	0	1	57	1.05
59573--59704	68	1.9	68	89	6	205	40	0	1	57	1.08
59577--59688	36	3.3	34	70	11	104	39	0	1	58	1.08
59669--59705	14	2.7	15	88	12	53	54	0	0	45	1.00
59713--59757	21	2.1	21	91	0	72	2	13	33	51	1.53
72735--72797	30	2.1	30	100	0	126	9	6	30	53	1.58
75597--75636	20	2.0	20	95	0	71	25	20	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83684--83823	73	1.9	73	94	2	246	33	17	21	27	1.95
113878--113916	13	3.2	12	86	10	53	56	5	0	38	1.22
119960--120010	21	2.4	21	90	0	84	27	15	31	25	1.96
125980--126008	2	14.5	2	100	0	58	51	0	0	48	1.00
136607--136994	130	3.0	130	93	0	668	27	23	17	31	1.97
138124--138158	3	11.7	3	100	0	70	31	0	0	68	0.90
138157--138182	3	8.7	3	100	0	52	0	0	30	69	0.89
138739--138838	53	1.9	52	87	6	148	37	14	12	37	1.83

Tables:   1

The End!