Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014718.1 Corchorus olitorius cultivar O-4 contig14751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10280
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.35
Found at i:4845 original size:325 final size:326
Alignment explanation
Indices: 4072--4869 Score: 874
Period size: 336 Copynumber: 2.4 Consensus size: 326
4062 CACATTGGAA
*
4072 TTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAA
* * *
4137 AAATGGAAAAACGATATTAGAATCGTGAAAAACCCTTTCAATTTTTTTGGCATTAAATTATATAT
66 AAATGGAAAAACGATATTAGAAACGTGAAAAACCC-TTCAATTTTTTTGGCGTTGAATTATATAT
* * *
4202 TTTTTCTGAGTATTGTGGCAAAATATTTATAAAAAACTTTTCGGGTCAGTTTTTTACAAAATTTT
130 TTTTTCTGAATATTGTGGCAAAATATTTAAAAAAAACTATTCGGGTCAGTTTTTTAC--------
* * * * ***
4267 AGAGGAAATTTGTGTACTAACCATTACGGTTTTTGGCTAAAAATGCGTTAAGGAGTCCTGCCTCA
187 ACA-GAAATTTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTAAGGAGCCCCAACTCA
* * ** * * * *
4332 AATTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCAAAACCAAATCTTAG
251 AATTTGCATAATTTTTCGCAAAAAGAATCCTTGAAATATCTACATTCATCAAAACCAAATCTCAA
* ***
4397 CCACATTGGAT
316 CCAAAAAAGAT
* * * *
4408 ATAAGGATTTGTTTTTACTAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTGGAAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGG-AAA
* ** **
4473 AATAATGGAAAAACGATATTAGAAGCGTG-AAAGGCAGTCAATTTTTTTGGCGTTGAATTATATA
65 AA-AATGGAAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA
* * *
4537 TTTTTTCTGAATATT-TTGCAAAA-ATTTGAGAAAAAAACTATTCTGGTTAG-TTTTTAGC-CA-
129 TTTTTTCTGAATATTGTGGCAAAATATTT-A-AAAAAAACTATTCGGGTCAGTTTTTTA-CACAG
* * ** * **
4597 AAA-TTGTGTACTAACTATCACTGTTTTTTGGCTAAAAACGCGTTTCGGGGCCCCAACTCAGTTT
191 AAATTTGTGTACTAACCATCAC-GGTTTTTGGCTAAAAACGCGTTAAGGAGCCCCAACTCAAATT
*
4661 TGCATAATTTTTCGTAAAAAGAATCCTTGAAATATCTACATTCATC-AAACCAAATCTCAACCAA
255 TGCATAATTTTTCGCAAAAAGAATCCTTGAAATATCTACATTCATCAAAACCAAATCTCAACCAA
4725 AAAAGAT
320 AAAAGAT
* * *
4732 TTAAGGATTTGTTTTTACGAGCATCCGAATCTTTGTTTCCATCTAATTAGAAATAAATTCGGAAA
1 TTAAGGATTTGTTTTTACGAGCATCTGAATC-TTGTTTCGATTTAATTAGAAATAAATTCGGAAA
* * * * * *
4797 AAAATTGGAAAAGCAATATTAGAAACGTGAAAAACCCTTCACTTTTTTTTCGTGTTGAATTATTT
65 AAAA-TGGAAAAACGATATTAGAAACGTGAAAAACCCTTCA-ATTTTTTTGGCGTTGAATTATAT
4862 ATTTTTTC
128 ATTTTTTC
4870 AAAGCAATGT
Statistics
Matches: 389, Mismatches: 63, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
323 2 0.01
324 89 0.23
325 106 0.27
326 27 0.07
327 1 0.00
334 4 0.01
335 14 0.04
336 112 0.29
337 9 0.02
338 25 0.06
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.37
Consensus pattern (326 bp):
TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAA
AAATGGAAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATT
TTTTCTGAATATTGTGGCAAAATATTTAAAAAAAACTATTCGGGTCAGTTTTTTACACAGAAATT
TGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTAAGGAGCCCCAACTCAAATTTGCATA
ATTTTTCGCAAAAAGAATCCTTGAAATATCTACATTCATCAAAACCAAATCTCAACCAAAAAAGA
T
Found at i:7815 original size:333 final size:327
Alignment explanation
Indices: 7053--8518 Score: 1634
Period size: 333 Copynumber: 4.5 Consensus size: 327
7043 TTTTCCAATG
* *
7053 AAATCGTGTACTAACTATCATGGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
1 AAATCGTGTACTAACCATCA-CGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
* * *
7118 GCATGAGTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAT
65 GCATGATTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAA
* * * * * *
7183 TGTATATAAGAATTTGTTTTTACGAGCATATGAGTC-TTATTTCGATTTAATTAATAATTAATTC
130 TGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAAAAATAAATTC
7247 AGAAAAAATAATGGAAAAACGATATTAGAAGCGT-AAAAAGGCCGTCAATCTTTTTGGCGTTGAA
195 AGAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAA--CCGTCAATCTTTTTGGCGTTGAA
* * * **
7311 TTATATATTTTTCTGAATAATTT-GCAAAAAATTCAGAAAAA--CTT---TTCAAGTT-AGTTTT
258 TTATATATTTTTCTGAAT-ATTTGGCAAAAAATTTAGAAAAACCCTTCGGGTCAATTTGAAATTT
*
7369 TAGCCG
322 TAGCCA
* * * * * * *
7375 AAATCGTATACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTTCGG-GCCCCGACTCAGTTTT
1 AAATCGTGTACTAACCATCAC-GATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
* * * *
7439 GCATGATTTTTGGCAG-AAAGACTCCTTGAAATAGCTATATTCATCTAACCAAATCTCAGTCACA
65 GCATGATTTTT-GCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACA
* * * * * *
7503 ATGGATTTAAGGATTTATTTTTACGAGCATCTCAATCTTTGTTTTGATTGAATTAAAAATAAATT
129 ATGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAAAAATAAATT
* * * *
7568 CGGAAAAAA-AATGGAAAAACGATATTAGAAGCGTGAAAAACCTTCAATGTTTTTGGCATTGAAT
194 CAGAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAACCGTCAATCTTTTTGGCGTTGAAT
* * *
7632 TATTTATTCTTTCTGACTATTGTGGCAAAAAATTTAGGAAAGACCCTTCGGGTCAATTTTTGCAA
259 TATATATT-TTTCTGAATATT-TGGCAAAAAATTTA-GAAAAACCCTTCGGGTCAA--TTTG--A
7697 AATTTTAG-CA
317 AATTTTAGCCA
*
7707 AAACTCGTGTACTAACCATCACGATTTTTGTCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
1 AAA-TCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
* * *
7772 GCATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGCCACAC
65 GCATGATTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAA
* * * * *
7837 T-GTTTATAAGAATTTGTTTTTACGAGCGTCTAAATCTTT-TTTCGATTTAATTAATAATTAATT
130 TGGATT-TAAGAATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAAAAATAAATT
* * *
7900 AAGAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGGCTTTGAA
194 CAGAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAA-ACCGTCAATCTTTTTGGCGTTGAA
** * ** *
7965 TTATATATTTTTCTGAATATTTTAC-AAAAATTGAGAAAAACTTTTCGGGTC-A---G--TTTTT
258 TTATATATTTTTCTGAATATTTGGCAAAAAATTTAGAAAAACCCTTCGGGTCAATTTGAAATTTT
*
8023 AGCCG
323 AGCCA
** * ** * * *
8028 AAATCGTGTACTAACCATCACGGGTTTTGGTTAAAAACGCGTTTCATG-GCCTCGGCTTAGTTTT
1 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCG-TTCCGGAGTCTCGGCTCAATTTT
* * * * *
8092 GAATGATTTTTGGCAG-AAAGACTCCTAGAAATATCTATATTCATCTAACCAGATCTCAGCCACA
65 GCATGATTTTT-GCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACA
* * * *
8156 ATGGATTTAAGGATTTGATTTTACGAGCATCTGAATCTTTATTTTGATTTAATTAGAAATAAATT
129 ATGGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAAAAATAAATT
* * * * * * * *
8221 CGGGAAAAA-AATGGAAAAACGATATAATAAGAGTGAAAACCCTTCAATTTTTTTGGCGTTGAAT
194 CAGAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAACCGTCAATCTTTTTGGCGTTGAAT
* * * *
8285 TATTTATTATTTCTGAGTATTGTGGGCAAAAAATTTAGGAAAAACCC-TCGTGTGAATTTTTGCA
259 TATATATT-TTTCTGAATATT-T-GGCAAAAAATTTA-GAAAAACCCTTCGGGTCAA--TTTG--
*
8349 AAATTTTACCCA
316 AAATTTTAGCCA
* * * *
8361 AAATCATGTACTAACCATCACGATTTTTGCCTAAAAATGCGTTCCGGAGTCTCGTCTCAATTTTG
1 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTTG
* *
8426 CATGATTTTTGCCGCAAAGATTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATT
66 CATGATTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAAT
* *
8491 GTATATAAGAATTTGTTTTTACGAGCAT
131 GGATTTAAGAATTTGTTTTTACGAGCAT
8519 ATAGAAATAT
Statistics
Matches: 946, Mismatches: 152, Indels: 81
0.80 0.13 0.07
Matches are distributed among these distances:
319 28 0.03
320 205 0.22
321 171 0.18
322 91 0.10
323 18 0.02
324 9 0.01
325 3 0.00
328 4 0.00
329 2 0.00
330 16 0.02
331 8 0.01
332 69 0.07
333 294 0.31
334 28 0.03
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (327 bp):
AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTTG
CATGATTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAAT
GGATTTAAGAATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAAAAATAAATTCA
GAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAACCGTCAATCTTTTTGGCGTTGAATTA
TATATTTTTCTGAATATTTGGCAAAAAATTTAGAAAAACCCTTCGGGTCAATTTGAAATTTTAGC
CA
Found at i:8348 original size:653 final size:654
Alignment explanation
Indices: 7053--8521 Score: 2345
Period size: 653 Copynumber: 2.2 Consensus size: 654
7043 TTTTCCAATG
* * *
7053 AAATCGTGTACTAACTATCATGGATTTTTGGCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
1 AAATCGTGTACTAACCATCA-CGATTTTTGCCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
*
7118 GCATGAGTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAT
65 GCATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAT
* * *
7183 TGTATATAAGAATTTGTTTTTACGAGCATATGAGTCTTATTTCGATTTAATTAATAATTAATTCA
130 TGTATATAAGAATTTGTTTTTACGAGCATATAAATCTTATTTCGATTTAATTAATAATTAATTAA
7248 GAAAAAATAATGGAAAAACGATATTAGAAGCGTAAAAAGGCCGTCAATCTTTTTGGCGTTGAATT
195 GAAAAAATAATGGAAAAACGATATTAGAAGCGTAAAAAGGCCGTCAATCTTTTTGGCGTTGAATT
* *
7313 ATATATTTTTCTGAATAATTTGCAAAAAATTCAGAAAAACTTTTCAAGTTAGTTTTTAGCCGAAA
260 ATATATTTTTCTGAATAATTTACAAAAAATTCAGAAAAACTTTTCAAGTCAGTTTTTAGCCGAAA
* *
7378 TCGTATACTAACCATCACGGTTTTTTGGCTAAAAACGCGTTTCGGGCCCCGACTCAGTTTTGCAT
325 TCGTATACTAACCATCACGGTGTTTTGGCTAAAAACGCGTTTCGGGCCCCGACTCAGTTTTGAAT
* *
7443 GATTTTTGGCAGAAAGACTCCTTGAAATAGCTATATTCATCTAACCAAATCTCAGTCACAATGGA
390 GATTTTTGGCAGAAAGACTCCTAGAAATAGCTATATTCATCTAACCAAATCTCAGCCACAATGGA
*
7508 TTTAAGGATTTATTTTTACGAGCATCTCAATCTTTGTTTTGATTGAATTAAAAATAAATTCGGAA
455 TTTAAGGATTTATTTTTACGAGCATCTCAATCTTTATTTTGATTGAATTAAAAATAAATTCGGAA
* *
7573 AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCTTCAATGTTTTTGGCATTGAATTATTTA
520 AAAAAATGGAAAAACGATATAAGAAGAGTGAAAAACCTTCAATGTTTTTGGCATTGAATTATTTA
* *
7638 TTCTTTCTGACTATTGTGGCAAAAAATTTAGGAAAGACCCTTCGGGTCAATTTTTGCAAAATTTT
585 TTATTTCTGACTATTGTGGCAAAAAATTTAGGAAAAACCCTTCGGGTCAATTTTTGCAAAATTTT
*
7703 A-GCA
650 ACCCA
*
7707 AAACTCGTGTACTAACCATCACGATTTTTGTCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
1 AAA-TCGTGTACTAACCATCACGATTTTTGCCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTT
* *
7772 GCATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGCCACAC
65 GCATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAT
* * * *
7837 TGTTTATAAGAATTTGTTTTTACGAGCGTCTAAATCTTTTTTCGATTTAATTAATAATTAATTAA
130 TGTATATAAGAATTTGTTTTTACGAGCATATAAATCTTATTTCGATTTAATTAATAATTAATTAA
* * *
7902 GAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAGTCCGTCAATCTTTTTGGCTTTGAATT
195 GAAAAAATAATGGAAAAACGATATTAGAAGCGTAAAAAGGCCGTCAATCTTTTTGGCGTTGAATT
* * **
7967 ATATATTTTTCTGAATATTTTAC-AAAAATTGAGAAAAACTTTTCGGGTCAGTTTTTAGCCGAAA
260 ATATATTTTTCTGAATAATTTACAAAAAATTCAGAAAAACTTTTCAAGTCAGTTTTTAGCCGAAA
* * * * * *
8031 TCGTGTACTAACCATCACGG-GTTTTGGTTAAAAACGCGTTTCATGGCCTCGGCTTAGTTTTGAA
325 TCGTATACTAACCATCACGGTGTTTTGGCTAAAAACGCGTTTC-GGGCCCCGACTCAGTTTTGAA
* *
8095 TGATTTTTGGCAGAAAGACTCCTAGAAATATCTATATTCATCTAACCAGATCTCAGCCACAATGG
389 TGATTTTTGGCAGAAAGACTCCTAGAAATAGCTATATTCATCTAACCAAATCTCAGCCACAATGG
* * *
8160 ATTTAAGGATTTGA-TTTTACGAGCATCTGAATCTTTATTTTGATTTAATTAGAAATAAATTCGG
454 ATTTAAGGATTT-ATTTTTACGAGCATCTCAATCTTTATTTTGATTGAATTAAAAATAAATTCGG
* * * * *
8224 GAAAAAAATGGAAAAACGATATAATAAGAGTGAAAACCCTTCAATTTTTTTGGCGTTGAATTATT
518 AAAAAAAATGGAAAAACGATATAAGAAGAGTGAAAAACCTTCAATGTTTTTGGCATTGAATTATT
* * *
8289 TATTATTTCTGAGTATTGTGGGCAAAAAATTTAGGAAAAACCC-TCGTGTGAATTTTTGCAAAAT
583 TATTATTTCTGACTATTGT-GGCAAAAAATTTAGGAAAAACCCTTCGGGTCAATTTTTGCAAAAT
8353 TTTACCCA
647 TTTACCCA
* * *
8361 AAATCATGTACTAACCATCACGATTTTTGCCTAAAAATGCGTTCCGGAGTCTCGTCTCAATTTTG
1 AAATCGTGTACTAACCATCACGATTTTTGCCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTTG
* *
8426 CATGATTTTTGCCGCAAAGATTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATT
66 CATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATT
8491 GTATATAAGAATTTGTTTTTACGAGCATATA
131 GTATATAAGAATTTGTTTTTACGAGCATATA
8522 GAAATATCTA
Statistics
Matches: 748, Mismatches: 62, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
652 20 0.03
653 436 0.58
654 276 0.37
655 16 0.02
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (654 bp):
AAATCGTGTACTAACCATCACGATTTTTGCCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTTG
CATGAGTTTTGCCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATT
GTATATAAGAATTTGTTTTTACGAGCATATAAATCTTATTTCGATTTAATTAATAATTAATTAAG
AAAAAATAATGGAAAAACGATATTAGAAGCGTAAAAAGGCCGTCAATCTTTTTGGCGTTGAATTA
TATATTTTTCTGAATAATTTACAAAAAATTCAGAAAAACTTTTCAAGTCAGTTTTTAGCCGAAAT
CGTATACTAACCATCACGGTGTTTTGGCTAAAAACGCGTTTCGGGCCCCGACTCAGTTTTGAATG
ATTTTTGGCAGAAAGACTCCTAGAAATAGCTATATTCATCTAACCAAATCTCAGCCACAATGGAT
TTAAGGATTTATTTTTACGAGCATCTCAATCTTTATTTTGATTGAATTAAAAATAAATTCGGAAA
AAAAATGGAAAAACGATATAAGAAGAGTGAAAAACCTTCAATGTTTTTGGCATTGAATTATTTAT
TATTTCTGACTATTGTGGCAAAAAATTTAGGAAAAACCCTTCGGGTCAATTTTTGCAAAATTTTA
CCCA
Found at i:8575 original size:70 final size:70
Alignment explanation
Indices: 8452--8588 Score: 202
Period size: 70 Copynumber: 2.0 Consensus size: 70
8442 AAGATTCCTT
* * *
8452 GAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGTATATAAGAATTTGTTTTTACGAGC
1 GAAATATCTATATTCATCGAACCAAATCTCAGCCACAATGGATATAAGAATTTGATTTTACGAGC
8517 ATATA
66 ATATA
* * * * *
8522 GAAATATCTATATTCATCTAACTAGATCTCAGCCACAATGGATTTAAGGATTTGATTTTACGAGC
1 GAAATATCTATATTCATCGAACCAAATCTCAGCCACAATGGATATAAGAATTTGATTTTACGAGC
8587 AT
66 AT
8589 CTGAATCTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 59 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (70 bp):
GAAATATCTATATTCATCGAACCAAATCTCAGCCACAATGGATATAAGAATTTGATTTTACGAGC
ATATA
Found at i:9867 original size:323 final size:321
Alignment explanation
Indices: 8793--10207 Score: 1380
Period size: 323 Copynumber: 4.4 Consensus size: 321
8783 TTTGCAATGT
* * ** * *
8793 AATCGTGTACTAACTATCATGGTTTTTTGGCTAAAAACACGTTCCGGAGTCC-CGGCTCAATTTT
1 AATCGTGTACTAACCATCACGG-TTTTTGGCTAAAAACGTGTTTCGG-G-CCTCGGCTCAGTTTT
* * * * *
8857 GCATGATTTCTGGC-GTAAAGATTCCTTGAAATATCTATATTCATCGTACCAAATCTCAGCCACG
63 GCATGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACA
* ** * * *
8921 TTCTATATAAGGATTTGTTTTTACGAGCATATGAATC-TTATTTCGATTTAATTAGAAATTAATT
128 ATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAGAAATAAATT
* * * * *
8985 CG-TAAAAAAATGGAAAAACGATATTAGAAGCATGAACAGCCCGTCAATTTATTTAGCGTTGAAT
193 CGAAAAAAAAATGGAAAAACGATATTAGAAGCGTGAA-AACCCGTCAATTTTTTTGGCGTTGAAT
* * * *
9049 TATATATT-TTTCTAAATATTTTGCAAAAAATTGAGAAAAACTTTTCGAGTTAGTTTTTAGCCGA
257 TATATATTATTTCTGAATATTTGGCAAAAAATTGAGAAAAACTTTTCGGGTCAGTTTTTAGCCGA
* *
9113 AATCGTGTACTAAACATCACGGTTTTTGGCTAAAAACGTGTTTCGGGCTTCGGCTCAGTTTTGCA
1 AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGTGTTTCGGGCCTCGGCTCAGTTTTGCA
* * ** *
9178 TGATTTTTGCCAG-AAAGACTCCTTGAAATAGCTATATTCATATAACCAAATCTCAGTCACAATG
66 TGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAATG
* * *
9242 GATTTAAGGATTTGTTTTTACGAGCATCTCAATCTTTGTTTTGATTTAATTAGAAATAAATTCGG
131 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAGAAATAAATTC--
* * *
9307 GAAAAAAAGAA-GGAAAAAACGATATTAGAAGCGTGAAAAACCTTCAATTTTTTTGGCATTGAAT
194 GAAAAAAA-AATGG-AAAAACGATATTAGAAGCGTGAAAACCCGTCAATTTTTTTGGCGTTGAAT
* * * * * * *
9371 TATTTATTCTTTCTGAGTAATGTGGCAAAAAATTTAGGAAAAA-TCCTTCGGGTCAATTTTT-GC
257 TATATATTATTTCTGAAT-ATTTGGCAAAAAATTGA-GAAAAACT-TTTCGGGTCAGTTTTTAGC
*
9434 AAAATTTTAGCAA
319 ----------CGA
* * * * * *
9447 AACTCGTGTACTAACCATCACGATTTTTGCCTAAAAACGCGTTCCGGAGTCTCGGCTCAATTTTG
1 AA-TCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGTGTTTCGG-GCCTCGGCTCAGTTTTG
* * * * * *
9512 CATGAGTTTT-GCCGCAAAGACTCCTTGAAATATTTATATTCGTCGAACCAAATCCCAGCCACAC
64 CATGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAA
* * * * * *
9576 T-GTTTATAAGAATTTGTTTTTACGAGCGTCTAAATATTT-TTTCGATTTAATTA-ATAATTAAT
129 TGGATT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAGA-AATAAAT
* * * *
9638 TAAGAAAAAAATAATGGAAAAACGATATTAGAAGCGTGAAAAGGCCGTCAATCTTTTTGGCTTTG
192 T-CGAAAAAAA-AATGGAAAAACGATATTAGAAGCGTGAAAA-CCCGTCAATTTTTTTGGCGTTG
* *
9703 AATTAGATATT-TTTCTGAATATTTTGCAAAAAATTGAGAAAAAACTTTTCGGGTCAGTTTTTAG
254 AATTATATATTATTTCTGAATATTTGGCAAAAAATTGAG-AAAAACTTTTCGGGTCAGTTTTTAG
9767 CCGA
318 CCGA
* * * * *
9771 AATCGTGTACTAACCTTCACGGTTTTTGGTTAAAAACGTGTTTCATGGCCTCGGCTTAGTTTTGA
1 AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGTGTTTC-GGGCCTCGGCTCAGTTTTGC
* * * *
9836 ATGATTTTTGGCAG-AAAGACTCCTAGAAATATCTATATTCATCTAACCAGATCTCAACCACAAT
65 ATGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAAT
* *
9900 GGATTTAAGGATTTGATTTTACGAGCATCTGAATCTTTATTTTGATTTAATTAGAAATAAATTCG
130 GGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAGAAATAAATTCG
** * *
9965 GGAAAAAAATGGAAAAACGATATTATAAGCGTGAAAACCCTTCAATTTTTTTGGCGTTGAATTAT
195 AAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAACCCGTCAATTTTTTTGGCGTTGAATTAT
* * ** * *
10030 TTATTATTTCTGAGTATTGTGGGCAAAAAA-T---------TTTT---G-CAAAATTTTATCCAA
260 ATATTATTTCTGAATATT-T-GGCAAAAAATTGAGAAAAACTTTTCGGGTC-AGTTTTTAGCCGA
* * * * * * * *
10081 AATCGTGTACTAACCATAACGATTTTTGCCTAAAAATGCG-TTCTGGAGTCTCGTCTCAATTTTG
1 AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGTGTTTC-GG-GCCTCGGCTCAGTTTTG
* *
10145 CATGATTTTTGCCA-CAAAGACTCCTTTAAATATCTATATTCATCGAACCAAATCTCAGCCACA
64 CATGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACA
10208 TTGTATATAA
Statistics
Matches: 900, Mismatches: 151, Indels: 98
0.78 0.13 0.09
Matches are distributed among these distances:
309 5 0.01
310 111 0.12
313 4 0.00
317 1 0.00
318 96 0.11
319 47 0.05
320 19 0.02
321 28 0.03
322 75 0.08
323 167 0.19
324 56 0.06
325 19 0.02
332 1 0.00
333 33 0.04
334 51 0.06
335 93 0.10
336 94 0.10
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (321 bp):
AATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGTGTTTCGGGCCTCGGCTCAGTTTTGCA
TGATTTTTGGCAGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACAATG
GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTTATTTCGATTTAATTAGAAATAAATTCGA
AAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAACCCGTCAATTTTTTTGGCGTTGAATTATA
TATTATTTCTGAATATTTGGCAAAAAATTGAGAAAAACTTTTCGGGTCAGTTTTTAGCCGA
Done.