Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01014719.1 Corchorus olitorius cultivar O-4 contig14752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 142671
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:283 original size:31 final size:31
Alignment explanation
Indices: 213--322 Score: 125
Period size: 31 Copynumber: 3.6 Consensus size: 31
203 TTTGCTGCCA
* ***
213 CAAGCAATTAAGGATATAACG-TTAC-AAAA
1 CAAGCAATTAAGGATATAACGTTTTCGATTT
**
242 CAAGCAATTAAGGATATAACGTTTTTTATTT
1 CAAGCAATTAAGGATATAACGTTTTCGATTT
* * *
273 CATGCAATTAAGGATATGAGGTTTTCGATTT
1 CAAGCAATTAAGGATATAACGTTTTCGATTT
304 CAAGCAATTAAGGATATAA
1 CAAGCAATTAAGGATATAA
323 TCAGTTAGGG
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
29 21 0.31
30 2 0.03
31 44 0.66
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (31 bp):
CAAGCAATTAAGGATATAACGTTTTCGATTT
Found at i:508 original size:29 final size:31
Alignment explanation
Indices: 434--500 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
424 TTTAACGGAC
434 TATATCCTTAATTGCTCGCTTTTCGTAACGT
1 TATATCCTTAATTGCTCGCTTTTCGTAACGT
*
465 TATATCCTTAATTGCTTG-TTTT-GTAACGT
1 TATATCCTTAATTGCTCGCTTTTCGTAACGT
494 TATATCC
1 TATATCC
501 CAAATTGCAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
29 14 0.40
30 4 0.11
31 17 0.49
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (31 bp):
TATATCCTTAATTGCTCGCTTTTCGTAACGT
Found at i:4230 original size:3 final size:3
Alignment explanation
Indices: 4222--4261 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
4212 CTGTTTCTTT
* *
4222 TTA TTA TTA TTT TTA TTA TTA TTA TTA TTG TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
4262 GTGAAGCCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:4234 original size:12 final size:12
Alignment explanation
Indices: 4219--4257 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
4209 TTTCTGTTTC
4219 TTTTTATTATTA
1 TTTTTATTATTA
4231 TTTTTATTATTA
1 TTTTTATTATTA
* *
4243 TTATTATTGTTA
1 TTTTTATTATTA
4255 TTT
1 TTT
4258 ATTAGTGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTTATTATTA
Found at i:5718 original size:17 final size:17
Alignment explanation
Indices: 5698--5730 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5688 GTAATCTTTG
5698 ATCACCGGTGATCTTAC
1 ATCACCGGTGATCTTAC
*
5715 ATCACTGGTGATCTTA
1 ATCACCGGTGATCTTA
5731 AATTACTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (17 bp):
ATCACCGGTGATCTTAC
Found at i:5742 original size:17 final size:17
Alignment explanation
Indices: 5705--5745 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
5695 TTGATCACCG
* *
5705 GTGATCTTACATCACTG
1 GTGATCTTAAATCACTA
*
5722 GTGATCTTAAATTACTA
1 GTGATCTTAAATCACTA
5739 GTGATCT
1 GTGATCT
5746 AGGGGTGATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (17 bp):
GTGATCTTAAATCACTA
Found at i:7992 original size:17 final size:17
Alignment explanation
Indices: 7970--8005 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
7960 GACGCGGGTC
7970 GGATCCGGATTAGTCGG
1 GGATCCGGATTAGTCGG
7987 GGATCCGGATTAGTCGG
1 GGATCCGGATTAGTCGG
8004 GG
1 GG
8006 TAAGATTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.17, G:0.44, T:0.22
Consensus pattern (17 bp):
GGATCCGGATTAGTCGG
Found at i:20408 original size:21 final size:19
Alignment explanation
Indices: 20383--20440 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 19
20373 GCTGCTCTAA
20383 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* *
20404 TAATCTAATCTGTACAGTG
1 TAATCTCATCTGTACAGTC
*
20423 TAATCTCATCTATACAGT
1 TAATCTCATCTGTACAGT
20441 TGTTAAACAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 16 0.48
21 17 0.52
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:21871 original size:32 final size:32
Alignment explanation
Indices: 21835--21900 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
21825 CAGAATTCAA
21835 ATTCCGACAATCTTAAATTTTTATAGAAAATG
1 ATTCCGACAATCTTAAATTTTTATAGAAAATG
21867 ATTCCGACAATCTTAAATTTTTATAGAAAATG
1 ATTCCGACAATCTTAAATTTTTATAGAAAATG
21899 AT
1 AT
21901 CGACATGTAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.41, C:0.12, G:0.09, T:0.38
Consensus pattern (32 bp):
ATTCCGACAATCTTAAATTTTTATAGAAAATG
Found at i:25641 original size:21 final size:19
Alignment explanation
Indices: 25616--25666 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
25606 GCTGCTCTAA
25616 TAATCTCATCTGTACAGTACC
1 TAATCTCATCTGTACAGT--C
* * *
25637 TAATCTAATTTGTACAGTG
1 TAATCTCATCTGTACAGTC
25656 TAATCTCATCT
1 TAATCTCATCT
25667 ATATAGGCTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.36
21 16 0.64
ACGTcount: A:0.29, C:0.22, G:0.10, T:0.39
Consensus pattern (19 bp):
TAATCTCATCTGTACAGTC
Found at i:25854 original size:19 final size:19
Alignment explanation
Indices: 25830--25873 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
25820 AAAATGGTGG
25830 TGAAACGGTCAAACGATGA
1 TGAAACGGTCAAACGATGA
*
25849 TGAAACGGTCAAACGATGG
1 TGAAACGGTCAAACGATGA
25868 TGAAAC
1 TGAAAC
25874 AGTTATAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (19 bp):
TGAAACGGTCAAACGATGA
Found at i:54055 original size:19 final size:19
Alignment explanation
Indices: 54031--54067 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
54021 CTGTTTAACA
54031 ACTGTACATATGAGATTAC
1 ACTGTACATATGAGATTAC
*
54050 ACTGTACATATGATATTA
1 ACTGTACATATGAGATTA
54068 TTAGAGCAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (19 bp):
ACTGTACATATGAGATTAC
Found at i:61068 original size:18 final size:18
Alignment explanation
Indices: 61034--61076 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
61024 CCTAGCCAAG
*
61034 AAGAAGAAGAAATAAAGC
1 AAGAAGAAGAAAAAAAGC
*
61052 AAGAAGAA-AAACAAAAGG
1 AAGAAGAAGAAA-AAAAGC
61070 AAGAAGA
1 AAGAAGA
61077 TGCAGCAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.70, C:0.05, G:0.23, T:0.02
Consensus pattern (18 bp):
AAGAAGAAGAAAAAAAGC
Found at i:65952 original size:23 final size:23
Alignment explanation
Indices: 65926--65972 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
65916 CATCCACATC
*
65926 TAACCTATAGTCATACTTAGATG
1 TAACCTATAGTCATAATTAGATG
65949 TAACCTATAGTCATAATTAGATG
1 TAACCTATAGTCATAATTAGATG
65972 T
1 T
65973 GGTTATAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (23 bp):
TAACCTATAGTCATAATTAGATG
Found at i:66273 original size:27 final size:27
Alignment explanation
Indices: 66235--66291 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
66225 TTCAATGTTG
66235 AGTCGTCTCAATTCAAAACTCTAGAAT
1 AGTCGTCTCAATTCAAAACTCTAGAAT
66262 AGTCGTCTCAATTCAAAACTCTAGAAT
1 AGTCGTCTCAATTCAAAACTCTAGAAT
66289 AGT
1 AGT
66292 GTCAAATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30
Consensus pattern (27 bp):
AGTCGTCTCAATTCAAAACTCTAGAAT
Found at i:66350 original size:16 final size:16
Alignment explanation
Indices: 66329--66361 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
66319 TCATCTAAAA
66329 TAACTGCATTATATCT
1 TAACTGCATTATATCT
66345 TAACTGCATTATATCT
1 TAACTGCATTATATCT
66361 T
1 T
66362 GATTAATTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.45
Consensus pattern (16 bp):
TAACTGCATTATATCT
Found at i:71298 original size:63 final size:64
Alignment explanation
Indices: 71199--71337 Score: 165
Period size: 63 Copynumber: 2.2 Consensus size: 64
71189 ATAACACCCC
* * * * *
71199 TATATGTTTAATAGGGTGGGTCTATAGATGCAGACTTATCA-GTATGTACACT-TGGGGTAGATT
1 TATATGTTTAATAAGATAGGTCTATAGATGCAGACTTATCAGGT-TGTACACTCAGGGGCAGATT
* * * * *
71262 TATATGTTTAATAAGATAGGTTTATAGATTCAGACTTGTTAGGTTGTACACTCAGGGGCATATT
1 TATATGTTTAATAAGATAGGTCTATAGATGCAGACTTATCAGGTTGTACACTCAGGGGCAGATT
71326 TATATGTTTAAT
1 TATATGTTTAAT
71338 TGGGCGGGCG
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
63 42 0.66
64 22 0.34
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.40
Consensus pattern (64 bp):
TATATGTTTAATAAGATAGGTCTATAGATGCAGACTTATCAGGTTGTACACTCAGGGGCAGATT
Found at i:88640 original size:18 final size:18
Alignment explanation
Indices: 88617--88651 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
88607 TACGAAGAAG
* *
88617 ATATGGGTGCTGATGAAT
1 ATATGGATGATGATGAAT
88635 ATATGGATGATGATGAA
1 ATATGGATGATGATGAA
88652 GATGCTGAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.31, T:0.31
Consensus pattern (18 bp):
ATATGGATGATGATGAAT
Found at i:89853 original size:1 final size:1
Alignment explanation
Indices: 89843--89876 Score: 59
Period size: 1 Copynumber: 34.0 Consensus size: 1
89833 AAATACACAG
*
89843 TTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
89877 AGATGACAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.00, C:0.00, G:0.03, T:0.97
Consensus pattern (1 bp):
T
Found at i:105150 original size:2 final size:2
Alignment explanation
Indices: 105143--105167 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
105133 ATCATCAAAT
105143 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
105168 TATTAATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:107427 original size:22 final size:23
Alignment explanation
Indices: 107399--107443 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
107389 AGTTAGCAAC
*
107399 TGAGATTTT-TAAAAAATGAAAA
1 TGAGATTTTAAAAAAAATGAAAA
107421 TGAGATTTTAAAAAAAATGAAAA
1 TGAGATTTTAAAAAAAATGAAAA
107444 GCAAAAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.58, C:0.00, G:0.13, T:0.29
Consensus pattern (23 bp):
TGAGATTTTAAAAAAAATGAAAA
Found at i:110748 original size:11 final size:11
Alignment explanation
Indices: 110734--110761 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
110724 AAAAATGGCC
110734 AAAAAAGAAAG
1 AAAAAAGAAAG
110745 AAAAAAGAAAG
1 AAAAAAGAAAG
110756 AAAAAA
1 AAAAAA
110762 ACTAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:117335 original size:2 final size:2
Alignment explanation
Indices: 117328--117357 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
117318 ATCAATGAAT
*
117328 TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
117358 GATTAACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:123268 original size:19 final size:19
Alignment explanation
Indices: 123244--123282 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
123234 GAACAGGAGA
123244 CCAGGATTTTTATTATTGT
1 CCAGGATTTTTATTATTGT
*
123263 CCAGGATTTTTCTTATTGT
1 CCAGGATTTTTATTATTGT
123282 C
1 C
123283 TTGCTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (19 bp):
CCAGGATTTTTATTATTGT
Found at i:123741 original size:68 final size:66
Alignment explanation
Indices: 123632--123764 Score: 185
Period size: 68 Copynumber: 2.0 Consensus size: 66
123622 GTGTTGGACT
* ** *
123632 CTTAATTTTAGTGACTAGCATTCGATTGCTAACAGTCTCAACTCTTTCAAGTACCAAAAATAATT
1 CTTAATTTTAATGACTAAAATTCGATTCCTAACAGTCTCAACTC--TCAAGTACCAAAAATAATT
123697 ACC
64 ACC
* * *
123700 CTTAATTTTAATGACTAAAATTCGATTCCTAACAGTTTCAACTCTCAAGTATCAAAAATGATTAC
1 CTTAATTTTAATGACTAAAATTCGATTCCTAACAGTCTCAACTCTCAAGTACCAAAAATAATTAC
123765 TATGTAAAAC
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
66 19 0.33
68 39 0.67
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (66 bp):
CTTAATTTTAATGACTAAAATTCGATTCCTAACAGTCTCAACTCTCAAGTACCAAAAATAATTAC
C
Found at i:125509 original size:22 final size:20
Alignment explanation
Indices: 125479--125521 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
125469 ACACATATCA
*
125479 AATACTACTATTATATTTAATT
1 AATACTACT-TTAT-TATAATT
*
125501 AATAGTACTTTATTATAATT
1 AATACTACTTTATTATAATT
125521 A
1 A
125522 TTATAGGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (20 bp):
AATACTACTTTATTATAATT
Found at i:127173 original size:11 final size:11
Alignment explanation
Indices: 127157--127187 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
127147 GAAAATCTCT
127157 TAATGATGGGA
1 TAATGATGGGA
*
127168 TAATGATGAGA
1 TAATGATGGGA
127179 TAATGATGG
1 TAATGATGG
127188 CATTTTGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (11 bp):
TAATGATGGGA
Found at i:129555 original size:319 final size:315
Alignment explanation
Indices: 128823--130024 Score: 1047
Period size: 319 Copynumber: 3.7 Consensus size: 315
128813 ACCCGAAGAA
* * * * * * * *
128823 TTTTTCCTCAATTTTTGGCAAAAATACTCATAAAATATATATAATTCAATGCCAAAAATATTGGA
1 TTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA
* *
128888 GGAATTTTCACGCTTTTAATATCGTTTTT-CATAATTTTTCCGAATTAATTTCTAATTAAATCGA
66 GGATTTTTCACGCTTCTAATATCGTTTTTACAT--TTTTTCCGAATTAATTTCTAATTAAATCGA
* * * *
128952 AACAAGATTCAAATACAC-TTACAAACAAATTAATCCTTATATCCAATGTGGCTGAGATTTAATT
129 AATAAGATTCAGATGCTCGTTA-AAAC--A--AATCCTTATATCCAATGTGGCTGAG----AATT
* ** * * *
129016 ATATGAATAAAGATATTTCAAGGAGTCTCGGCACCAAAAATCATGCAAAACAGAATTGTGG-CCC
185 -TATGAAT--AGATATTTTAAGGAGTCTTTGCACCAAAAATCATGCAAAACTGAATCG-GGACTC
* * * * * ** *
129080 CGGAACGCGTTTTTAGTCAAAAATTGTAATGATTAGTACATGATTTCAGC-TAAAAACTAACCCG
246 CGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTTGGCATAAAAACTGACCCG
*
129144 AAAAG
311 TAAAG
* * * * * * * *
129149 TTTTTTCTTAATTTATTACTACAATACTTAGAAAAAATATATAATTCAACGCCAAAAAGATTGAC
1 TTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA
129214 GG-TCTTTTCACGCTTCTAATATCGTTTTTACA-TTTTTCCGAATTAATTTCTAATTAAATCGAA
66 GGAT-TTTTCACGCTTCTAATATCGTTTTTACATTTTTTCCGAATTAATTTCTAATTAAATCGAA
* *
129277 ACT-AGATTCAGATGCTCGTTACAACAAATCATTATATCCAATGTGGCTGAG-A-TT-TG-ATAG
130 A-TAAGATTCAGATGCTCGTTAAAACAAATCCTTATATCCAATGTGGCTGAGAATTTATGAATAG
* ** *
129337 ATATTTTAAGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGCCGGGACTTCGGAACGCGTTTT
194 ATATTTTAAGGAGTCTTTGCACCAAAAATCATGCAAAACTGAATCGGGACTCCGGAACGCGTTTT
*
129402 TAGCCAAAAATCGTGATGGTTAATACACGATTTTGGCTAAAATTTTACAAAAACTGACCCGTAAA
259 TAGCCAAAAATCGTGATGGTTAGTACACGATTTTGGC----A---T--AAAAACTGACCCGTAAA
129467 G
315 G
129468 TTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA
1 TTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA
* * * * *
129533 GGGTTTTTCACGCTTATAATATCGTTTTTCCATTTTTTCC-AATTTTATTTCTAATCAAATCGAA
66 GGATTTTTCACGCTTCTAATATCGTTTTTACATTTTTTCCGAA-TTAATTTCTAATTAAATCGAA
* *
129597 ATAAGATTCAGATGCTCG-TAAAATCAAATCCTTAAATTCAATGTGGCTGAGAATTTGTTAGATG
130 ATAAGATTCAGATGCTCGTTAAAA-CAAATCCTTATATCCAATGTGGCTGAGAA--T-TT--ATG
* *** * * *
129661 AATATAGATATTTTAAGGAGTTTTTATGCCAAAAA-CTATGCAAAACTGATTCGAGA-TCCCGAA
189 -A-ATAGATATTTTAAGGAGTCTTTGCACCAAAAATC-ATGCAAAACTGAATCGGGACT-CCGGA
* * * * * *
129724 ACGCTTTTTTAGCCAAAAACCCTGATGGTTAGTACACGGTTTTGGC-TAAAAATTGACCC-T--T
250 ACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTTGGCATAAAAACTGACCCGTAAA
*
129785 T
315 G
** * * * * *
129786 TTTATTTTTCAAATTTTTGCCACAATACTCATAAAGAATATATAATTCAACTCCAAAAAAGTTGA
1 TTT-TTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGA
* * ** * *
129851 AGGATTTTTCACTCTTCTAATATCGTTTTTCCATTTTTTTAGACTTAATTTCAAATTAAATCGAA
65 AGGATTTTTCACGCTTCTAATATCGTTTTTACATTTTTTCCGAATTAATTTCTAATTAAATCGAA
* * * * * ** * *
129916 ATAAGATTCAGATGTTCGTAAAAACGAATCGTTAGATAGAATGTGGCTGGGATTTGGTTTAATGA
130 ATAAGATTCAGATGCTCGTTAAAACAAATCCTTATATCCAATGTGGCTGAGA----ATTT-ATG-
* * * *
129981 ATATAGATATTTGAAGGAGTCTTTACGCCAAAAACCATGCAAAA
189 A-ATAGATATTTTAAGGAGTCTTTGCACCAAAAATCATGCAAAA
130025 TTGAGCCTGG
Statistics
Matches: 730, Mismatches: 105, Indels: 89
0.79 0.11 0.10
Matches are distributed among these distances:
308 2 0.00
309 83 0.11
311 2 0.00
312 2 0.00
313 1 0.00
314 1 0.00
315 1 0.00
317 1 0.00
318 3 0.00
319 298 0.41
320 100 0.14
321 13 0.02
322 1 0.00
323 1 0.00
324 46 0.06
325 5 0.01
326 77 0.11
327 2 0.00
328 2 0.00
330 2 0.00
331 87 0.12
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (315 bp):
TTTTTCCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA
GGATTTTTCACGCTTCTAATATCGTTTTTACATTTTTTCCGAATTAATTTCTAATTAAATCGAAA
TAAGATTCAGATGCTCGTTAAAACAAATCCTTATATCCAATGTGGCTGAGAATTTATGAATAGAT
ATTTTAAGGAGTCTTTGCACCAAAAATCATGCAAAACTGAATCGGGACTCCGGAACGCGTTTTTA
GCCAAAAATCGTGATGGTTAGTACACGATTTTGGCATAAAAACTGACCCGTAAAG
Found at i:132803 original size:322 final size:319
Alignment explanation
Indices: 131220--133648 Score: 2399
Period size: 322 Copynumber: 7.4 Consensus size: 319
131210 TGAGATTTGC
* * * * * *
131220 GCCAAAAATCATTCAAAATTGAGTCGGGGCTCC-AGAACGCGTTTTTAGCCATAAACCGTGATGA
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGA-AACGCGTTTTTAGCCAAAAACTGTAATG-
* ** * ** * * *
131284 GTTAATACACGATTTCGGCTAAAATTTTGCAAAAACTAACATGAAAAGTTTTCCTAATTTTTTGT
64 GTTAGTACACGATTTCGGCTAAAA-ACTG-----ACT--C--GAAAATTTTTTTTAAATTTATGC
* * * ** * * *
131349 CACAATACTCAGAAAAAAAATATAATTTAATTCCAAAAAAATTGAAGAGTTTTTTCACGCTTGTA
119 CACAATACTCAGAAAAAATATGTAATTCAACGCCAAAAATATTGAAG-GGTTTTTCACGCTTCTA
* * *
131414 ATATCGTTTTTCCATTTTTTTCCCGAATTTATTTCTAATTAAATCGAAGCAAGATTCAGTTGCTG
183 ATATCGTTTTTCCA-TTTTTT-CCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
** * * *
131479 GTAAAAACAAATTATTAAATCCAAGGTGCCTGAGATTTGGTTAGATGAATATACATATTTCAAGG
246 GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGG
*
131544 AGTCTTTCT
311 AGTTTTTCT
* * * *
131553 GCCAAAAATCATGCAAAACTGTGACGGGGCCCCGAAACGCGTTTTTAGCCCCAAAACTATAATGG
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAG-CCAAAAACTGTAATGG
* *
131618 TTAGTACACGATTTCGGCTAAAAACTTACTCGAAATTTTTTTTTATGAATTTATGCCACAATACT
65 TTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTTTA--AATTTATGCCACAATACT
* * * * ** *
131683 CGGAAAAAATATGTAATTCAACGCCAAAAATATTGACGAGCTTCACACGCTTCTATTATCGTTTT
128 CAGAAAAAATATGTAATTCAACGCCAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTTTT
* * * * *
131748 TCCATTTTTTTCCAAATTAATTTCTAATTAAATAGAAACAAAATTCAGATGCTCGTAAAAATAAA
193 TCCA-TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * *
131813 TCCTTATATCCAATGTTGCTGAGATTTGGTTCGATGAATATAGATATTTTAAGGAGTATTTGC-
257 TCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGT-TTTTCT
* * * * * * * *
131876 GCCAAAAATCATTCAAAATTGAGTCGGGGCTCTGGAATGCGTTTTTAGCCAAAAATTGTGATGGA
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTAATGG-
* * ** * *
131941 TTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAC-CTAAAAAGTTTTCCTAATTTTTTGC
65 TTAGTACACGATTTCGGC--------T--AAAAACTGACTC-GAAAATTTTTTTTAAATTTATGC
* * * *
132005 CACAATACTCAGAAAAAATATATAATTTAATG-CAAAAA-ATTGAAGAGTTTTTTCACGCTTCTA
119 CACAATACTCAGAAAAAATATGTAATTCAACGCCAAAAATATTGAAG-GGTTTTTCACGCTTCTA
* * *
132068 ATATCGTTTTTCCATTTTTTTTTTTCCGAATTTTTTTCTAATTAAATCGAAACAACATTCAAATG
183 ATATCGTTTTTCCA-----TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATG
* * ** *
132133 CTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTAATTAGATGAATTTAGATATTTCA
243 CTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCA
** *
132198 AGGAGACTTTAT
308 AGGAGTTTTTCT
* * * * * * *
132210 GCCAAAAACCATGAAAAACTGAGTCGAGGCCTCGAAATGCGTTTTTAGCCAAAAACCGTTATGGT
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTAATGGT
* * * * *
132275 TAGTACACGATTTCGGTTAAAAACTGACCCGAAAATTTTTTTTCTCAATTT-TCCTCCATAATAC
66 TAGTACACGATTTCGGCTAAAAACTGACTCGAAAA-TTTTTTT-TAAATTTAT--GCCACAATAC
* * * * * *
132339 TCTGAAAAATATATG-AA-TCAACGCAAAAAAAAATGAAGGGTTTTTCACGCTTCTAATATAGCT
127 TCAGAAAAA-ATATGTAATTCAACGCCAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTT
** * * *
132402 TTTCCATTTTTTTTGAATTTATTTCTAATTAAATCGAAGCAAGATTTAGATGCTGGTAAAAACAA
191 TTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAA
** *
132467 ATTATTAAATCCAATGTGGCTGAGATTTGGTTAGATGGATATAGATATTTCAAGGAGTTTTTCT
256 ATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTCT
* *
132531 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACACGTTTTTAGCAACAAAACTGTAATGG
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCA-AAAACTGTAATGG
*
132596 TTAGTACACGATTTCGGCTAAAAACTGACTCGAATATTTTTTTTATGAATTTATGCCACAATACT
65 TTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTTTA--AATTTATGCCACAATACT
* * ** * *
132661 CAGAAAAAATATGTAATTCAACGCCAAAAATATTGACGGGCTTCACACGTTTCTAATATCATTTT
128 CAGAAAAAATATGTAATTCAACGCCAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTTTT
* * * * * * * *
132726 TACATTTTTTCCAAATTAATTTCTAATTAAATAGAATCAAAATTCAAATGCTCGTAAAAATAAAT
193 TCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT
* * * * * * *
132791 CCTTATATCCAATGTCGCTGAGATTTGGTTCGATAAATATTGATATTTTAAGGAGTATTTGC-
258 CCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGT-TTTTCT
* * * * * * * **
132853 GCCAAAAATCATTCAAAATTGAGTCGAGGCTCCGGAACGTGTTTTTAGCCAAAAACCGTGGTGAG
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTAATG-G
* * ** * * * *
132918 TTTGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAC-CTGAACAGTTTTCCTCAATTTTTTT
65 TTAGTACACGATTTCGGC--------T--AAAAACTGACTC-GAA-AATTTTTTTTAAATTTATG
* * * * * *
132982 TCACAATACTCATAAAAAATATATAATTCAATGCCAAAACA-ATTGAAGAGTTTTTTCATGCTTC
118 CCACAATACTCAGAAAAAATATGTAATTCAACGCCAAAA-ATATTGAAG-GGTTTTTCACGCTTC
* *
133046 TAATATCGTTTTTCCTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCGGATGCTC
181 TAATATCGTTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
* * * *
133111 ATAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATAAATTTAGATATTTCAAGG
246 GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGG
* **
133176 AGTCTTTAA
311 AGTTTTTCT
* * * * * * *
133185 GCCAATAACCATGAAAAACTGAGTCGAGGCCTCGAAACGCGTTTTTAGCCAAAAAACCGTGATGG
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCC-AAAAACTGTAATGG
* * * *
133250 TTAGTACACGATTTCGGCTAAAAACTGACCCG-AAATTTTTTTCTAAATTTTCTTCTACAATACT
65 TTAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTT-TAAA-TTTATGCCACAATACT
* *
133314 CTA-AAAAATATATG-AA-TCAACG-CAAAAATGTTTGAAGGGTTTTTCACGCTTCTAATATAGT
128 C-AGAAAAA-ATATGTAATTCAACGCCAAAAAT-ATTGAAGGGTTTTTCACGCTTCTAATATCGT
* * *
133375 TTTTCCATTTTTTCTGAATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCTGGTAAAAACA
190 TTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACA
**
133440 AATTATTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTCT
255 AATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTCT
* * * *
133505 GCCAAAAATCATGTAAGACTGAGTCGGGGCCCCTAAACGCGTTTTTAGCACCAAAACTGTAATGG
1 GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGC-CAAAAACTGTAATGG
133570 TTAGTACACGATTTCGGCTAAAAACTGACTC-AAAATGTTTTTTTACGAATTTATGCCACAATAC
65 TTAGTACACGATTTCGGCTAAAAACTGACTCGAAAAT-TTTTTTTA--AATTTATGCCACAATAC
133634 TCAGAAAAAATATGT
127 TCAGAAAAAATATGT
133649 CATGCCAAAA
Statistics
Matches: 1717, Mismatches: 310, Indels: 150
0.79 0.14 0.07
Matches are distributed among these distances:
319 1 0.00
320 249 0.15
321 222 0.13
322 293 0.17
323 187 0.11
324 41 0.02
325 56 0.03
326 51 0.03
327 13 0.01
329 6 0.00
330 32 0.02
331 85 0.05
332 198 0.12
333 119 0.07
334 164 0.10
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (319 bp):
GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCAAAAACTGTAATGGT
TAGTACACGATTTCGGCTAAAAACTGACTCGAAAATTTTTTTTAAATTTATGCCACAATACTCAG
AAAAAATATGTAATTCAACGCCAAAAATATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
ATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT
TAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTTCT
Found at i:133168 original size:654 final size:638
Alignment explanation
Indices: 131349--133592 Score: 2206
Period size: 654 Copynumber: 3.4 Consensus size: 638
131339 AATTTTTTGT
* * * * * *
131349 CACAATACTCAGAAAAAAAATATAATTTAATTC-CAAAAAAATTGAAGAGTTTTTTCACGCTTGT
1 CACAATACTCAGAAAAAATATGTAATTCAA--CGCAAAAATATTGAAG-GGTTTTTCACGCTTCT
* * * **
131413 AATATCGTTTTTCCATTTTTTTCCCGAATTTATTTCTAATTAAATCGAAGCAAGATTCAGTTGCT
63 AATATCATTTTTCCA-TTTTTT-CCGAATTTATTTCTAATTAAATCGAATCAAAATTCAAATGCT
* ** * **
131478 GGTAAAAACAAATTATTAAATCCAAGGTGCCTGAGATTTGGTTAGATGAATATACATATTTCAAG
126 CGTAAAAACAAATCCTTAAATCCAATGTG-CTGAGATTTGGTTAGATGAATATTGATATTTCAAG
* * * * * *
131543 GAGTCTTT-CTGCCAAAAATCATGCAAAACTGTGACGGGGCCCCGAAACGCGTTTTTAGCCCCAA
190 GAGTATTTAC-GCCAAAAATCAT-TAAAACTGAGTCGAGG-CCCGAAACGCGTTTTTAG-CCAAA
** * * * * ** *
131607 AACTATAATGGTTAGTACACGATTTCGGC------TAAAAACTTACTCGAAATTTTTTTTTATGA
251 AACCGTAATGGTTAGTACACGATTTCGGCTAAAATTAAAAACTGACCCGAAA-ATGTTTTCCTCA
* * * * * **
131666 ATTTAT--GCCACAATACTCGGAAAAAATATGTAATTCAACGCCAAAAATATTGACGAGCTTCAC
315 ATTT-TCCTCCACAATACTC-TAAAAAATATATAATTCAACGCCAAAAA-ATTGAAGAGTTTTTC
* * * * *
131729 ACGCTTCTATTATCGTTTTTCCATTTTTTTCCAAATTAATTTCTAATTAAATAGAAACAAAATTC
377 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTC
* * * *
131794 AGATGCTCGTAAAAATAAATCCTTATATCCAATGTTGCTGAGATTTGGTTCGATGAATATAGATA
442 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
* * * * * * * *
131859 TTTTAAGGAGTATTTGCGCCAAAAATCATTCAAAATTGAGTCGGGGCTCTGGAATGCGTTTTTAG
507 TTTCAAGGAGT-TTTTCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAG
* * * *
131924 CCAAAAATTGTGATGGATTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCTAAAAAGT
571 CAAAAAACTGTGATGG-TTAGTACACGATTTCGGC--------T--AAAAACTGACC--GAAATT
** * *
131989 TTTCCTAATTTTTTGC
623 TTTTTTAAATTTATGC
* * * *
132005 CACAATACTCAGAAAAAATATATAATTTAATGCAAAAA-ATTGAAGAGTTTTTTCACGCTTCTAA
1 CACAATACTCAGAAAAAATATGTAATTCAACGCAAAAATATTGAAG-GGTTTTTCACGCTTCTAA
* * * *
132069 TATCGTTTTTCCATTTTTTTTTTTCCGAATTTTTTTCTAATTAAATCGAAACAACATTCAAATGC
65 TATCATTTTTCCA-----TTTTTTCCGAATTTATTTCTAATTAAATCGAATCAAAATTCAAATGC
* **
132134 TCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTAATTAGATGAAT-TTAGATATTTCA
125 TCGTAAAAACAAATCCTTAAATCCAATGTG-CTGAGATTTGGTTAGATGAATATT-GATATTTCA
* * * *
132198 AGGAG-ACTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCTCGAAATGCGTTTTTAGCCAA
188 AGGAGTA-TTTACGCCAAAAATCAT-TAAAACTGAGTCGAGGCC-CGAAACGCGTTTTTAGCCAA
* * *
132262 AAACCGTTATGGTTAGTACACGATTTCGG------TTAAAAACTGACCCGAAAATTTTTTTTCTC
250 AAACCGTAATGGTTAGTACACGATTTCGGCTAAAATTAAAAACTGACCCGAAAA-TGTTTTCCTC
* * * * *
132321 AATTTTCCTCCATAATACTCTGAAAAATATATGAA-TCAACGCAAAAAAAAATGAAGGGTTTTTC
314 AATTTTCCTCCACAATACTCTAAAAAATATAT-AATTCAACGC-CAAAAAATTGAAGAGTTTTTC
* * * * *
132385 ACGCTTCTAATATAGCTTTTCCATTTTTTT-TGAATTTATTTCTAATTAAATCGAAGCAAGATTT
377 ACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTC
* ** *
132449 AGATGCTGGTAAAAACAAATTATTAAATCCAATGTGGCTGAGATTTGGTTAGATGGATATAGATA
442 AGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATA
*
132514 TTTCAAGGAGTTTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACACGTTTTTAG
507 TTTCAAGGAGTTTTTC-GCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAG
*
132579 CAACAAAACTGTAATGGTTAGTACACGATTTCGGCTAAAAACTGACTCGAATATTTTTTTTATGA
571 CAA-AAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAC-CGAA-ATTTTTTTTA--A
132644 ATTTATGC
631 ATTTATGC
* * ** *
132652 CACAATACTCAGAAAAAATATGTAATTCAACGCCAAAAATATTGACGGGCTTCACACGTTTCTAA
1 CACAATACTCAGAAAAAATATGTAATTCAACG-CAAAAATATTGAAGGGTTTTTCACGCTTCTAA
* * * *
132717 TATCATTTTTACATTTTTTCCAAATTAATTTCTAATTAAATAGAATCAAAATTCAAATGCTCGTA
65 TATCATTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAATCAAAATTCAAATGCTCGTA
* * * * *
132782 AAAATAAATCCTTATATCCAATGTCGCTGAGATTTGGTTCGATAAATATTGATATTTTAAGGAGT
130 AAAACAAATCCTTAAATCCAATGT-GCTGAGATTTGGTTAGATGAATATTGATATTTCAAGGAGT
* * * *
132847 ATTTGCGCCAAAAATCATTCAAAATTGAGTCGAGGCTCCGGAACGTGTTTTTAGCCAAAAACCGT
194 ATTTACGCCAAAAATCATT-AAAACTGAGTCGAGGC-CCGAAACGCGTTTTTAGCCAAAAACCGT
** * * *
132912 GGTGAGTTTGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCTGAACA-GTTTTCCTCAAT
257 AATG-GTTAGTACACGATTTCGGCTAAAA--TT--AAAAACTGACCCGAAAATGTTTTCCTCAAT
** * * *
132976 TTTTTTTCACAATACTCATAAAAAATATATAATTCAATGCCAAAACAATTGAAGAGTTTTTTCAT
317 TTTCCTCCACAATACTC-TAAAAAATATATAATTCAACGCCAAAA-AATTGAAGAG-TTTTTCAC
*
133041 GCTTCTAATATCGTTTTTCC-TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCGG
379 GCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAG
* * * *
133105 ATGCTCATAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATAAATTTAGATATT
444 ATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATT
** * * * * *
133170 TCAAGGAGTCTTTAAGCCAATAACCATGAAAAACTGAGTCGAGGCCTCGAAACGCGTTTTTAGCC
509 TCAAGGAGT-TTTTCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAG-C
*
133235 AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTCTAAATTT
572 AAAAAACTGTGATGGTTAGTACACGATTTCGGCTAAAAACTGA-CCGAAATTTTTTT-TAAA-TT
* *
133300 TCTTC
634 TATGC
* *
133305 TACAATACTCTA-AAAAATATATG-AA-TCAACGCAAAAATGTTTGAAGGGTTTTTCACGCTTCT
1 CACAATACTC-AGAAAAA-ATATGTAATTCAACGCAAAAAT-ATTGAAGGGTTTTTCACGCTTCT
* * *
133367 AATAT-AGTTTTTCCATTTTTTCTGAATTTATTTCTAATTAAATCGAAAT-AAGATTCAGATGCT
63 AATATCA-TTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCG-AATCAAAATTCAAATGCT
* ** *
133430 GGTAAAAACAAATTATTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAG
126 CGTAAAAACAAATCCTTAAATCCAATGT-GCTGAGATTTGGTTAGATGAATATTGATATTTCAAG
* * * * *
133495 GAGT-TTTTCTGCCAAAAATCATGTAAGACTGAGTCGGGGCCCCTAAACGCGTTTTTAGCACCAA
190 GAGTATTTAC-GCCAAAAATCAT-TAAAACTGAGTCGAGG-CCCGAAACGCGTTTTTAGC-CAAA
*
133559 AACTGTAATGGTTAGTACACGATTTCGGCTAAAA
251 AACCGTAATGGTTAGTACACGATTTCGGCTAAAA
133593 ACTGACTCAA
Statistics
Matches: 1338, Mismatches: 192, Indels: 120
0.81 0.12 0.07
Matches are distributed among these distances:
643 152 0.11
644 24 0.02
645 17 0.01
646 1 0.00
647 37 0.03
648 30 0.02
649 6 0.00
651 12 0.01
652 227 0.17
653 76 0.06
654 273 0.20
655 169 0.13
656 152 0.11
657 155 0.12
658 7 0.01
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (638 bp):
CACAATACTCAGAAAAAATATGTAATTCAACGCAAAAATATTGAAGGGTTTTTCACGCTTCTAAT
ATCATTTTTCCATTTTTTCCGAATTTATTTCTAATTAAATCGAATCAAAATTCAAATGCTCGTAA
AAACAAATCCTTAAATCCAATGTGCTGAGATTTGGTTAGATGAATATTGATATTTCAAGGAGTAT
TTACGCCAAAAATCATTAAAACTGAGTCGAGGCCCGAAACGCGTTTTTAGCCAAAAACCGTAATG
GTTAGTACACGATTTCGGCTAAAATTAAAAACTGACCCGAAAATGTTTTCCTCAATTTTCCTCCA
CAATACTCTAAAAAATATATAATTCAACGCCAAAAAATTGAAGAGTTTTTCACGCTTCTAATATC
GTTTTTCCATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAA
ACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTT
TCGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCAAAAAACTGTGATG
GTTAGTACACGATTTCGGCTAAAAACTGACCGAAATTTTTTTTAAATTTATGC
Found at i:136244 original size:320 final size:322
Alignment explanation
Indices: 133771--136852 Score: 3442
Period size: 320 Copynumber: 9.5 Consensus size: 322
133761 AAGTTTTCCT
* * *
133771 AATTTT-TTGCCACAATACTCTGAAAAAATATAT-AATTCAATGCCAAAAAAATTGAAGAGTTCT
1 AATTTTCTT-CCACAATACTCT-AAAAAA-ATATGAATTCAACGCAAAAAAAATTGAAGGGTT-T
*
133834 TTCACGCTTCTAATATCGTTTTTCCATTATTTTTTTTCCGAATTTATTTCTGATTAAATCGAAAC
62 TTCACGCTTCTAATATCGTTTTTCC---ATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAAC
* * ** *
133899 AAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGAAT
124 AAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAAT
* * *
133964 TTAGATATTTCAAGGAGTCTTTAAGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAACGCG
189 GTAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCG
* * *
134029 TTTTTAGGCCAAAAACCGTGATGGTTAGTACACGACTTCGGCTAAAAACTGACTCGAAATTTTTT
254 TTTTTA-GCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAATTTTTTT
*
134094 TTCTT
318 TTCTC
* *
134099 AATTTTCTTCTACAATACTCTAAAAAATATATGAA-TCAACGCAAAAAAAGTTTGAAGGGTTTTT
1 AATTTTCTTCCACAATACTCTAAAAAA-ATATGAATTCAACGCAAAAAAA-ATTGAAGGGTTTTT
*
134163 CACGCTTCTAATATAGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGAT
64 CACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGAT
* * *
134227 TCAGATACTCGTAAATACAAATCCTAAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGA
129 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGA
* *
134292 TATTTCAAGGAGTTTTTATGCCAAAAACCATGAAAAACTTAGTCGAGGCCCCGAAATGCGTTTTT
194 TATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTT
* *
134357 AACCAAAAACCGTGATGGTTAGTACACGATTTCGACTAAGAAA-TGACCCGAAATTTTTTTTTTT
259 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA-AAACTGACCCG-AA--TTTTTTTTT
134421 CTC
320 CTC
134424 AATTTTCTTCCACAATACTCTAAAAAATATATGAA-TCAACG-AAAAAAAATTGAAGGGTTTTTC
1 AATTTTCTTCCACAATACTCTAAAAAA-ATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTC
* *
134487 ACGCTTCTAATATAGTTTTTCCATTCTTTTTTCCGAATTTATTTCAAATTAAATCGAAACAAGAT
65 ACGCTTCTAATATCGTTTTTCCATT-TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGAT
* ** * * *
134552 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTAGATGTATATAGA
129 TCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGA
* * * * * * *
134617 TATTTC---GAGTCTTTCTGCCACAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGTGTTTTT
194 TATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTT
* * * * * * *
134679 AGCTCCAAAACTGTAATGATTAGTACACGATTTAGGCTAAAAACTGACTCGAAATTTTTTTTTAT
259 AGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AATTTTTTTTTCT
*
134744 G
322 C
* * * * * * * **
134745 AA-TTTATTCCACAATACTCTGAAAAAATATGTAATTCAACGCCATAAATATTGACGGGCTTCAC
1 AATTTTCTTCCACAATACTCTAAAAAAATATG-AATTCAACGCAAAAAAAATTGAAGGGTTTTTC
* * * *
134809 ACGCTTCGAATATCGTTTTT-C-TATTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAAATT
65 ACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATT
* * * * * * * *
134872 CAGATGCTCGGAAAAATAAATCCTTATATCCAATGTCGCC-GAGATTTGGTTCGATAAATATAGA
130 CAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGT-GCCTGAGATTTGATTAGATGAATGTAGA
* * ** * ** * * * * *
134936 TATTTTAAGGAGTTTTTGCGCCAAAAATCATTCAAAATTGAGTCGGGGCTCCGGAACGC-TTTTT
194 TATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTT
* * *
135000 AAGACAAAAATCGTGATGGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCTGAA-
259 -AGCCAAAAACCGTGAT-GGTTAGTACACGATTTCGGC--------T--AAAAACTGACCCGAAT
*** *
135064 AAGTTTTCCT-
312 TTTTTTTTCTC
* * * * *
135074 AATTTT-TTCCATAATACTC-AGAAAAAATATATAATTCAATGCCAAAAAAATTGAAGAGTTTTT
1 AATTTTCTTCCACAATACTCTA-AAAAAATAT-GAATTCAACGCAAAAAAAATTGAAG-GGTTTT
* *
135137 TCACGCTTCCAATATTGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGA
63 TCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGA
* * * * *
135202 TTTAGATGCTCGTAAAAACAAATCCTTAAATCCAAAGAGTCTGAG-TTTGGTTTAGATGAATGTA
128 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTT-GATTAGATGAATGTA
* * *
135266 GATATTTCAAGAAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCGCAAAATGCGTTT
192 GATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTT
*
135331 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTAACCCGAATTTTTTTTTTT
257 TTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAA--TTTTTTTTT
135396 CTC
320 CTC
*
135399 AATTTTCTTCCACAATACTCTAAAAAAATATATGAA-TCAATGCAAAAAAAATAAAAAAAATGAA
1 AATTTTCTTCCACAATACTCT-AAAAAA-ATATGAATTCAACGCAAAAAAAAT--------TGAA
* * * *
135463 GGGTTTTTCACGCTTCTATTATCGTTTTTTCA-TTTTTTT-AGAATTTATTTCAAATTAAATCGA
56 GGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGA
* * * * * *
135526 AATAAGATTTAGATGCTTGTAAATATAAATCCTTAATTCCAAGGTGCCTGAGATTTGATTAGATG
121 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATG
* * * * *
135591 AATGTAGATATTCCAAGGAGTCTTTATGCAAAAAACTATGAAAAACCGAGTCGAGGCCCCAAAAT
186 AATGTAGATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAAT
*
135656 GCGTTTTTAGCCAAAAACCGTGATGG---GTACACGATTTCGGCTAAAAACTGACTCGAATTTTT
251 GCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAA-TTTT
* *
135718 TTTTTTTT
315 TTTTTCTC
* * * * * *
135726 ATGAATTTATTCCACAATACTC-AGAAAAAATATGTAATTCAACGCCAAAAATATTGACGGGCTT
1 A--ATTTTCTTCCACAATACTCTA-AAAAAATATG-AATTCAACGCAAAAAAAATTGAAGGGTTT
** * *
135790 CACAGGCTTCTAATATCGTTTTTCCATTTTTTTTTCAGAATTTATTTCTAATTAAATCGAAACAA
62 TTCACGCTTCTAATATCGTTTTTCCA-TTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAA
* * * * *
135855 GATTCAGATGCTCGTAAATACAAATCCTTAAATCCAAGGAGTCTGAGTTTTGATTAGATGAACGT
126 GATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGT
*
135920 AGATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGGGTCGAGGCCCCGAAATGCGTT
191 AGATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTT
* *
135985 TTTAGCCAAAAATCGTGAT-GTAACGTACACGATTTCGGCTAAAAACTGACCCGAA-TTTTTTTT
256 TTTAGCCAAAAACCGTGATGGTTA-GTACACGATTTCGGCTAAAAACTGACCCGAATTTTTTTTT
136048 CTC
320 CTC
*
136051 AATTTTCTTCCACAATACTCTAAAAAAA-ATGAA-TCAATGCAAAAAAAAATTGAAGGGTTTTTC
1 AATTTTCTTCCACAATACTCTAAAAAAATATGAATTCAACGC-AAAAAAAATTGAAGGGTTTTTC
* * *
136114 ACGCTTCTAATATCGTTTTTTCATTTTTTTTCCAAATTTATTTTTAATTAAATCGAAACAAGATT
65 ACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATT
* * *
136179 CAGATGCACGTAAATAA-AAATCCTGAAATCCAAGGTGCCTGAGATTTGATTAGATAAATGTAGA
130 CAGATGCTCGTAAA-AACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGA
* * * * * *
136243 TATTTCAAGGAGTTTTTACGCCAAAAACCATGAAAAATTGAGTTGAGGCCCAGAAATGTGTTTTT
194 TATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTT
*
136308 AGCCAAAAACCGTGAT-G-T--TACACGATTTCGGCTAAAAATTGACCCGAAATTTTTTTTTCTC
259 AGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCG-AATTTTTTTTTCTC
* * *
136369 AATTTTCTTCCACAATACTCTGAAAAATATATGAA-TCAACGCAAAAAAATGTTTGAAGTGTTTT
1 AATTTTCTTCCACAATACTCT-AAAAAAATATGAATTCAACGCAAAAAAA--ATTGAAGGGTTTT
* * *
136433 TCAGGCTTCTAATATAGTTTTTCCA-TTTTTTTCTGAATTTATTTCTAATTAAATCGAAACAAGA
63 TCACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGA
* ** * * * * *
136497 TTCAGATGCTGGTAAAAACAAATTATCAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAG
128 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAG
* * * * * * *
136562 ATATTTTAAGGAGTCTTTCTGCCAAAAATCATGCAAGACTGAGTCGCGGCCCCGAAACGCGTTTT
193 ATATTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTT
* * * * * * * *
136627 TAGCACCAAAACTGTAATGGTTTGTACACGATTTTGGCTAAAAACTGACTCGAA-ATTTTTTTAT
258 TAGC-CAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAATTTTTTTTTCT
*
136691 G
322 C
* * * * * * **
136692 AA-TTTATGCCACAATACTC-AGAAAAAATATGTAATTCAACGCCAAAAATATTGACGGGCTTCA
1 AATTTTCTTCCACAATACTCTA-AAAAAATATG-AATTCAACGCAAAAAAAATTGAAGGGTTTTT
* * * * *
136755 CATGCTTCTAATATCGTTTTTCCA-TTTTTTTCCAAATTAATTT-TCAATTAAATAGAAACAAAA
64 CACGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCT-AATTAAATCGAAACAAGA
* ** * *
136818 TTTAGATGCTCACAAAAATAAATCCTTATATCCAA
128 TTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA
136853 TGACGCCGAG
Statistics
Matches: 2351, Mismatches: 316, Indels: 181
0.83 0.11 0.06
Matches are distributed among these distances:
316 27 0.01
317 2 0.00
318 32 0.01
319 116 0.05
320 356 0.15
321 255 0.11
322 208 0.09
323 293 0.12
324 179 0.08
325 191 0.08
326 27 0.01
327 103 0.04
328 69 0.03
329 75 0.03
330 31 0.01
331 187 0.08
332 164 0.07
333 31 0.01
334 5 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (322 bp):
AATTTTCTTCCACAATACTCTAAAAAAATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTCA
CGCTTCTAATATCGTTTTTCCATTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTC
AGATGCTCGTAAAAACAAATCCTTAAATCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGATA
TTTCAAGGAGTCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTTAG
CCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAATTTTTTTTTCTC
Found at i:139767 original size:322 final size:322
Alignment explanation
Indices: 136920--142671 Score: 5973
Period size: 323 Copynumber: 17.8 Consensus size: 322
136910 GGGATCATAG
*
136920 ACGATTTCGGCTAAAAACTGACCCG-AAATTTTTTTCTCAATTTTCTTCCACAATACTCTGAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
* * * *
136984 ATATATGAA-TCAACGCAAAAAAAGTTTGAAGGGTTTTTCACGTTTCTGATATAGTTTTTCCACT
66 ATATATGAATTCAACGCAAAAAAA-ATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-T
* * * **
137048 TTCTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGTTGGTAAAAACAAATTATT
129 TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * *
137113 AAATTCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGACTTTCTGCCAAAA
194 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
* * * * * *
137178 ATCATGCAAGACTGAGCCGAGGCCCCGAAACGCGTTTTTAGCACCAAAACTGTAATGGTTAGTAC
259 ATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGC-CAAAAACCGTGATGGTTAGTAC
* * * * * * *
137243 ACGATTTCGGCTAAAAACTGACTCGGAAATTTTTTT-TTATGAATTTATGCCATAATACTC-AGA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCA--ATTTTCTTCCACAATACTCTA-A
* * * * **
137306 AAAA-ATATGTAATTCAACGCCAAAAATATTGACGGGCTTCGCACGCTTCTAATATCGTTTTTCC
63 AAAATATATG-AATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
* * * * * * *
137370 ATTCTTTTCC-ATATTAATTTTTAATTAAATGGAAACAAAATTCAAATGCTCGTAAAAATAAATC
127 ATTTTTTTCCGA-ATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
** * * * * * **
137434 CTTTTATCCAAAGTCGCTGAGATTTGGTTCGATGAATATAGATATTTTAAGGAGTGTTTGCGCCA
191 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCA
** * * * * * ***
137499 AAAATCATTCAAAATTGAGTCGGGGCTCTGGAACGCGTTTTTAG-CAAAATATTTTTGATGGGTT
256 AAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAA-A-CCGTGAT-GGTT
137563 AGTAC
318 AGTAC
* * *
137568 ACGATTTCGGCTAAAATTTTGCAAAAACTGACCTGAAAA-GTTTTCCTCAATTTT-TTGCCACAA
1 ACGATTTCGGC--------T--AAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTT-CCACAA
* * * * * *
137631 TACTCAGAAAAAATATAT-AATTCAATGCCAAAAAAATTGAAGAGTTTTTTCACTCTTCTAATTT
55 TACTC-TAAAAAATATATGAATTCAACGCAAAAAAAATTGAAG-GGTTTTTCACGCTTCTAATAT
* * *
137695 CGTTTTTCCATATTTTTTTCCGAATTTATTTATAATTAAATCGAAACAAGATTCAGATGGTCATA
118 CGTTTTTCC--ATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTA
* * * * * *
137760 AAAACAAATCCTCAAATCCAAGGAGCCTGAGATTTGATTAGATGAATGTAGATATTTCAAGGAGT
181 AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGT
* * * *
137825 CTTTATGCCAAAAATCATTAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTTAGCCAAAAACTGA
246 CTTTATGCCAAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGT
*
137890 GAT-GTAACGTAC
311 GATGGTTA-GTAC
* *
137902 ACGATTTCGGCTAAAAACTGACCCGCAAATTTTTTTCTCAGTTTTCTTCCACAATACTCTAAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
* * * *
137967 ATATATGAA-TCGACGAAAAAAAAATTGAAAGGTTTTTCACGCTTCTAATATAGTTTTTCCCATT
66 ATATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTT-CCATT
* * * *
138031 TTTTTCCGAATTTATTTCTAATTAAATAGAAACAAGAATCGGATACTCGTAAAAACAAATCCTTA
130 TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
* * * *
138096 AATCCAAGGTGGTTGAGATTTGGTTAGATGAATATAGATATTT---TGAGTCTTTCTGCCAAAAA
195 AATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAA
* * * * * *
138158 TCATGCAAAACTGAGTCGCA-GTCCCGAAACGTGTTTTTAGCCCAAAACTGTAATGGTTAGTAC
260 TCATGAAAAACTGAGTCG-AGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
*
138221 ACGATTTCGGCTAAAAACTGACCCG-AAATTTTCTTTCTCAA-TTTATTCCACAATACTC-AGAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTT-TTTCTCAATTTTCTTCCACAATACTCTA-AA
* * * ** * *
138283 AAA-ATATGAATTCAACGCACAAAATATT-AACGGGCTTCACAGGCTTCTAATATCGTTTTTCAA
64 AAATATATGAATTCAACGCAAAAAAAATTGAA-GGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* * *
138346 TTTTTTTTCCGAATTTATATCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAATAGAAATCC
128 -TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * * * * * * * *
138411 TTAAATCCAAGGAGTCTAAGTTTTGATTAGATGAATGTAGATATTTCAAGGACTCTTTATGTCAA
192 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAA
* * * * *
138476 AAACCATGAAAAACTGAGTCGA-GACTCGAAATGCGTTTTTAGCCAAAAACCGTGAT-GTAACGT
257 AAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTA-GT
138539 AC
321 AC
* * *
138541 ACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTCATCCGCATAATACTCTAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTC-TTC-CACAATACTCTAAA
* * *
138606 AAATATATGAA-TCAACGCAAAAAAAAGTTTGAAGGGTTTTTCATGCTTATAATATAG-TTTTCC
64 AAATATATGAATTCAACGCAAAAAAAA--TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC
* * * *
138669 TTTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGC-CGGTAAAAGCAAATT
127 ATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC-GTAAAAACAAATC
* * * *
138733 ATTATATCCAATGTGGCTGAGATTTGGTTAGATAAATATAGATATTTCAAGGAGTCTTTCTGCCA
191 CTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCA
* * ** * * * * * *
138798 AAAATCATGCAAAACTGAGTCGGGGCTGCAAAACGTGTTTTTAGCCCCAAAACTGTAATGGTAAC
256 AAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTA-
138863 GTAC
319 GTAC
* * * * * *
138867 ACGATTTCGGCTAAAAA-TGACTCGAAATTTTTTTTATGAA-TTTATGCCACAATACTC-AAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
* * * * * * ** *
138929 AAATATGTAATTTAACGCCAAAAATATTGACGGGCTTCACACGCTTCTAATATCATTTTTCCATT
66 ATATATG-AATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA-T
* * * * * *
138994 TTTTTTCCAAATTAAATTCTAATTAAATAGAAACAAAATTCAGATGCTCGTAAAAATAAATCCTT
129 TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * * * * * **
139059 ATATCCAATATCGCAGAGATTTGGTTCGATGAATATAGATATTTTAAGGAGTCTTTGCGCCAAAA
194 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
** * * * * * * * *
139124 ATCATTCAAAATTGAATCGGGGCTCCAAAACGCGTTTTTAGCCAAAAATCGTGGTGGGTTAGTAT
259 ATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGAT-GGTTAGTAC
* * *
139189 ACGATTTTGGCTAAAAAGTTGCAAAAACTGACCTGAAAA-TTTTTCCTCAATTTT-TTGCCACAA
1 ACGATTTCGGC--------T--AAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTT-CCACAA
* * ** * *
139252 TACTCAGAAAAAATATAT-AATTCAATGCCGAGAAAATTGAAGAGTTTTTTCACGCTTCTAATAT
55 TACTC-TAAAAAATATATGAATTCAACGCAAAAAAAATTGAAG-GGTTTTTCACGCTTCTAATAT
* *
139316 CGTTTTTCCATTTGCCTTTTCCGAAATTATTTCTAACTAAATCGAAACAAGATT-AGATGCTCGT
118 CGTTTTTCCATTT---TTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT
* *
139380 AAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTGAGATGAATTTAGATATTTCAAGGAG
180 AAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
*
139445 TCTTTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCG
245 TCTTTATGCCAAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCG
139510 TGATGGTTAGTAC
310 TGATGGTTAGTAC
** *
139523 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTGCCTCAATTTTCTTCCACTATACTCTAAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
* * * *
139588 ATATATGAA-TCAATGCAAAAAAAAAGTGAAGTGTTTTTCACGCTTCTAATATCGTTTTTTCATT
66 ATATATGAATTCAACGC-AAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATT
* * *
139652 TTTTTCCGAATTTATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAATAAATCTTTA
130 TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
* ** * * * ** *
139717 AATCCAATATCCCAGAGATTTGGTTCGATGAATATAGATATTTTAAGGAGTCTTTGCGTCAAAAA
195 AATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAA
** * * * * * *
139782 TCATTCAAAATTGAGTCGGGGCTCCAAAACGCGTTTTTAGCCAAAACCCGTGATGGGTTAGTAT
260 TCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGAT-GGTTAGTAC
* * * * *
139846 ACGATTTTGGCTAAAATTTTGCAAAACTGACCTGAAAA-GTTTTTATCAATTTT-TTGTCACAAT
1 ACGATTTCGGCT---A------AAAACTGACCCGAAAATTTTTTTCTCAATTTTCTT-CCACAAT
* * *
139909 ACTC-AGAAAAATATAT-AATTCAATGCCAAAAAAATTGAAGAGTTTTTTCACGCTTCTAATATC
56 ACTCTA-AAAAATATATGAATTCAACGCAAAAAAAATTGAAG-GGTTTTTCACGCTTCTAATATC
* * *
139972 GTTTTTCCATTTTTTTTACGAATTTATTTTTAATTAAATCGAAACAAGATTCAGATACTCGTAAA
119 GTTTTTCCA-TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAA
* ** * * * * *
140037 AACAAATCCTTAAATCCAAGGTACCTGAGAATTGATTAGATGAATGTAGATATTTCACGGATTCT
183 AACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCT
* *
140102 TTATGCCAAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTTAGCCAAAAACCGTGA
248 TTATGCCAAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
140167 TGGTTAGTAC
313 TGGTTAGTAC
* * *
140177 ACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTCAATTTTCTTCCATAATACTCTGAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
140242 ATATATGAA-TCAACGCAAAAAAAAAGCTTGAAGGG-TTTTCACGCTTCTAATATCGTTTTTCCA
66 ATATATGAATTCAACGC-AAAAAAAA--TTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* *
140305 TTTTCTTTTTTCCGAAATTATTTCTAATTAAATCGAAACAAGATT-AGATGCTCATAAAAACAAA
128 ---T-TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * *
140369 TCCTTAAATCCAATGTGGCTGAGATTTGGTAAGATGAATTTAGATATTTCAAGGAGTTTTTATGC
189 TCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGC
* *
140434 CAAAAACCATGAAAAAACTGAGTCGAGGCTCCGAAACGCGTTTTTAGCCAAAAACC---------
254 CAAAAATCATG-AAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTT
140490 -GT--
318 AGTAC
* * *
140492 --GA-------TAAAAATTGACCCGAAATTTTTTTTTTCTCAATTTTCTTCCATAATACTCTAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAA--ATTTTTTTCTCAATTTTCTTCCACAATACTCTAAA
* * * * *
140548 AAATATATGAA-TCAACGCAAAAAAAGTTTGAAGGGTTTGTCATGCTTATAATATAGTTTTTCCA
64 AAATATATGAATTCAACGCAAAAAAA-ATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCA
* **
140612 TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATGC-CGGTAAAAACAAATTA
128 TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTC-GTAAAAACAAATCC
* * *
140676 TTATATCCAATGTGGCTGAGATTTGGTTAGATGAATATGGATATTTCAAGGAGTCTTTCTGCCAA
192 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAA
* * * * * * *
140741 AAATCATGCAAAACTGAGTCGGGGCCGCGAAACGCGTTTTTAGCCCCAAAACTGTAAT-G--CGT
257 AAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTAGT
140803 AC
321 AC
* ** * * * *
140805 ACGATTTCGGCTAAAAA-TGACTCGAATTTTTTTTTATGAA-TTTATACCACAATACTC-AGAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTA-AAA
* * * * **
140867 AA-ATATGTAATTCAACGCCAAAAATATTGACGGGCTTCACACGCTTCTAATATCGTTTTTCCAT
65 AATATATG-AATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCAT
* * * ** * *
140931 TTTTTTCCAAATTAATTTCTAATTAAATAGAATTAAAATTCAGATGCTCGTAAAAATAAATCCTT
129 TTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTT
* * * * * * **
140996 ATATCCAATATCGCAGAGATTTGGTTCGATGAATATAGATATTTTAAGGAGTCTTTGCGCCAAAA
194 AAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAA
* * ** *
141061 ATCATTAAAAATTGAGTCG-GAGCTTCAAAACGCGTTTTTAGCCAAAAACCGTGATGGGTTAGTA
259 ATCATGAAAAACTGAGTCGAG-GCCCCGAAACGCGTTTTTAGCCAAAAACCGTGAT-GGTTAGTA
*
141125 T
322 C
* * * *
141126 ACGATTTTGGTTAAAATTTTGCAAAACTGACCTG-AAA-TGTTTTCATCAATTTT-TTGCCACAA
1 ACGATTTCGGCT---A------AAAACTGACCCGAAAATTTTTTTC-TCAATTTTCTT-CCACAA
** * * * * *
141188 TACTGAGAAAAAATATAT-AATTCAATGCCAAAAAAATTGATGAGTGTTTTCACGCTTCTAATAG
55 TACT-CTAAAAAATATATGAATTCAACGCAAAAAAAATTGAAGGGT-TTTTCACGCTTCTAATAT
* * *
141252 CGTTTTTCCATTTTTTTTCTGAATTTATTTTTAATTAAATCGAAACATGATTCAGATGCTCGTAA
118 CGTTTTTCCA-TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAA
** ** * * * *
141317 AAACAAATCCTTAAATCCAGGGTACCTGAGAATTGATTAGATGAATGTAGATATTTCAAGGAATC
182 AAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTC
* * *
141382 TTTATGCCAAAAACCATGAAAAACTTAGTCGAGGCCCCGAAATGCGTTTTTAGCCAAAAACCGTG
247 TTTATGCCAAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTG
141447 ATGGTTAGTAC
312 ATGGTTAGTAC
* ** * *
141458 ACGATTTCGGCTAAAAACTGACCCAAAAATTTTTGCCTCATTTTTCTTCCACTATACTCTAAAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
* * * *
141523 ATATATGAA-TCAATGCAAAAAAAAAAAAAGTGAAGTGTTTTTCACGCTTCTAATATCGTTTTTT
66 ATATATGAATTCAACGC-----AAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
*
141587 CATTTTTTTTTCCGAATTTATTTCTAATTAAATAGAAACAAGATTCAGATGCTCGTAAAAACAAA
126 CA--TTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * * * *
141652 TCCTTAAGTCCAAGGTGCCTGAGATTTGATTAGATGAATGTAGATATTTCAAGGTGTTTTTATGC
189 TCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGC
* * * *
141717 CCAAAACCATGAAAAACTGAGTCGAGGCCCCGAAATGCGTTTTTAGCCAAAAATCGTGATGGTTA
254 CAAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTA
*
141782 GTAA
319 GTAC
* *
141786 ACGATTTCGGCTAAAAACTGAACCGAAAATTTTTTTTCTCAATTTTTCTTCCAGAATACTCTAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAA-TTTTTTTCTCAA-TTTTCTTCCACAATACTCTAAA
* **
141851 AAATATATGAA-TCAATGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTTTTT
64 AAATATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCG--TTTTTCC
* * *
141915 ATTTTTTTCCGAATTTATTTCTAATTAAATTGAAACATGATTCAGATGCTCGTAAAAATAAATCC
127 ATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCC
* * *
141980 TTAAATCCAAGGTGCCTGAGATTTGATTAGATGAA-AGTAGATATTTCAAGGAGTCTTTATGCCA
192 TTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATA-TAGATATTTCAAGGAGTCTTTATGCCA
* * *
142044 AAAACCATGAAAAACTGAGTCGAGGCCGCGAAACGCGTTTTTTGCCAAAAACCGTGATGG--AGT
256 AAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGT
142107 AC
321 AC
* * * *
142109 ACGTTTTCGGCTGAAAACTGACCCGAAATTTTTTTTCTCAATTTTCTGT-CACAATACTCT-GAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCT-TCCACAATACTCTAAAA
* * *
142172 AA-ATAT-AA-TCAACGCAAAAAAAAAAATTCGAAGGGTTTATCACACTTCTAATATAGTTTTTC
65 AATATATGAATTCAACGC---AAAAAAAATT-GAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
* * *
142234 CATTTTTTTCAGAATTTATTTCTAATTAAATCGAAACAAGATTCAAATTCT-GCTAAAAACAAAT
126 CATTTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCG-TAAAAACAAAT
** * * * * *
142298 TATTAAATCTAATGTGGCTGATATTTGGTTAGATGAATATAGATATTTCAAGCAGTTTTTCTGCC
190 CCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCC
* * * * ** *
142363 AAAAATCATGCAAAACTGAGTCGGGGCCCCAAAACGCGTTTTTAGCCCCAAAACTATAATGGTTA
255 AAAAATCATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAG-CCAAAAACCGTGATGGTTA
142428 GTAC
319 GTAC
* * * * *
142432 ACGACTTCGCCTAAAAACTGA-CCGAAAATTTTTGTTCTCAATTTTCTGCTACAATACTCTGAAA
1 ACGATTTCGGCTAAAAACTGACCCGAAAATTTTT-TTCTCAATTTTCTTCCACAATACTCTAAAA
* *
142496 ATTATAT-AATTCAA--CAAAAAAAATT-AAGGGTTTTTCACGCTTCTAATATAGTTTTTCCATT
65 AATATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATT
* * * **
142557 TTTTTCCGAATTTATTTCTAATTAAATCAAAACAAGATTCAGATGCTGGTTAAAACAAATTATTA
130 TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
* * * *
142622 AATCCAATATTGCTGAGATTTCGTTAGTTGAATATAGATATTTCAAGGAG
195 AATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAG
Statistics
Matches: 4556, Mismatches: 674, Indels: 402
0.81 0.12 0.07
Matches are distributed among these distances:
303 71 0.02
304 91 0.02
306 24 0.01
307 31 0.01
308 52 0.01
311 2 0.00
313 2 0.00
315 2 0.00
317 32 0.01
318 363 0.08
319 265 0.06
320 226 0.05
321 177 0.04
322 335 0.07
323 530 0.12
324 363 0.08
325 407 0.09
326 142 0.03
327 112 0.02
328 222 0.05
329 15 0.00
330 65 0.01
331 124 0.03
332 235 0.05
333 238 0.05
334 93 0.02
335 158 0.03
336 173 0.04
337 6 0.00
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.33
Consensus pattern (322 bp):
ACGATTTCGGCTAAAAACTGACCCGAAAATTTTTTTCTCAATTTTCTTCCACAATACTCTAAAAA
ATATATGAATTCAACGCAAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTT
TTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAA
ATCCAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAAT
CATGAAAAACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
Done.