Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001472.1 Corchorus olitorius cultivar O-4 contig01472, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1040
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36


Found at i:803 original size:24 final size:24

Alignment explanation


    Indices: 771--817  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        761 TTTTTTTAAG

                                    
        771 ATTTATTTTTGTAAAAGGATTAGT
          1 ATTTATTTTTGTAAAAGGATTAGT

                                   
        795 ATTTATTTTTGTAAAAGGATTAG
          1 ATTTATTTTTGTAAAAGGATTAG

        818 GGTATATTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49


Consensus pattern (24 bp):   
ATTTATTTTTGTAAAAGGATTAGT

Found at i:825 original size:24 final size:24

Alignment explanation


    Indices: 774--825  Score: 77
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        764 TTTTAAGATT

                                *  *
        774 TATTTTTGTAAAAGGATTAGTATT
          1 TATTTTTGTAAAAGGATTAGGATA

                                 *  
        798 TATTTTTGTAAAAGGATTAGGGTA
          1 TATTTTTGTAAAAGGATTAGGATA

                
        822 TATT
          1 TATT

        826 AAGAGATTAA


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  24   25  1.00

ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48


Consensus pattern (24 bp):   
TATTTTTGTAAAAGGATTAGGATA
Done.