genome.fa.s14720.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01014720.1 Corchorus olitorius cultivar O-4 contig14753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120786

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--113	24	1.9	25	86	4	69	46	14	12	25	1.80
1186--1883	334	2.1	327	83	4	835	37	16	13	31	1.88
1914--1938	2	12.5	2	100	0	50	52	0	0	48	1.00
2167--3934	333	5.4	323	78	9	1530	35	16	14	32	1.89
2212--3624	641	2.2	644	82	5	1719	35	16	15	32	1.90
29899--29930	15	2.1	16	88	11	50	31	6	6	56	1.49
38239--38264	7	3.7	7	100	0	52	88	0	11	0	0.52
38751--38839	45	2.0	45	88	2	135	28	7	17	46	1.76
39618--39649	2	16.0	2	100	0	64	50	0	0	50	1.00
42381--42429	22	2.2	22	96	0	89	30	40	20	8	1.81
55208--55249	20	2.1	20	100	0	84	30	16	14	38	1.89
74637--74701	24	2.7	23	76	6	67	58	1	27	12	1.43
75856--76136	57	4.9	56	86	4	291	44	20	20	14	1.86
80044--80204	23	7.0	23	83	12	197	28	8	21	41	1.82
80060--80204	46	3.1	46	91	3	227	28	8	20	42	1.82
101694--101766	29	2.5	29	78	10	87	20	17	16	45	1.86
102524--102626	49	2.1	50	96	3	190	31	3	10	54	1.53
104921--104950	15	2.0	15	100	0	60	46	6	6	40	1.56
105524--105691	84	2.0	84	97	0	318	31	18	11	38	1.86
113130--113204	33	2.2	34	88	2	107	14	28	30	26	1.95
119463--119591	34	3.8	34	95	0	222	3	31	18	46	1.65
119480--119577	24	4.3	23	65	25	64	2	31	19	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119558--119785	62	3.5	62	86	11	348	3	39	21	35	1.69
119613--119761	72	2.1	72	98	0	289	2	42	19	35	1.66
119675--119699	10	2.5	10	100	0	50	0	52	0	48	1.00
120495--120554	20	3.0	20	90	4	68	26	16	8	48	1.75
120510--120551	20	2.0	22	90	9	70	26	14	9	50	1.73

Tables:   1

The End!