Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01014733.1 Corchorus olitorius cultivar O-4 contig14766, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2776
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36


Found at i:2151 original size:2 final size:2

Alignment explanation


    Indices: 2146--2191  Score: 65
    Period size: 2  Copynumber: 22.5  Consensus size: 2

       2136 ACTTTGCATA

                                                          *  *             
       2146 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AC ACT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT

                
       2189 AT A
          1 AT A

       2192 ACTAAAGCAT


Statistics
Matches: 41,  Mismatches: 2, Indels: 2
        0.91            0.04        0.04

Matches are distributed among these distances:
   2   40  0.98
   3    1  0.02

ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43


Consensus pattern (2 bp):   
AT

Found at i:2650 original size:3 final size:3

Alignment explanation


    Indices: 2642--2673  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

       2632 GCATGCTTAT

                                                      
       2642 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA

       2674 TTAGCTGTCT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
TAA

Done.